Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04500 316 / 9e-110 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G14100 75 / 3e-15 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G54080 75 / 3e-15 UBP1A oligouridylate-binding protein 1A (.1.2) AT1G11650 74 / 4e-15 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G17370 74 / 5e-15 UBP1B oligouridylate binding protein 1B (.1.2) AT3G19130 73 / 1e-14 ATRBP47B RNA-binding protein 47B (.1) AT5G54900 71 / 4e-14 ATRBP45A RNA-binding protein 45A (.1) AT4G27000 71 / 6e-14 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G47490 69 / 1e-13 ATRBP47C RNA-binding protein 47C (.1.2) AT1G49600 69 / 3e-13 ATRBP47A RNA-binding protein 47A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014659 [exp] 350 / 6e-123 AT3G04500 315 / 7e-109 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10021754 [exp] 79 / 1e-16 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10027641 [exp] 77 / 3e-16 AT1G17370 569 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10011924 [exp] 77 / 4e-16 AT1G17370 578 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10027911 [exp] 76 / 5e-16 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1) Lus10041109 [exp] 77 / 6e-16 AT1G17370 378 / 3e-129 oligouridylate binding protein 1B (.1.2) Lus10012071 [exp] 76 / 7e-16 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10012070 [exp] 76 / 9e-16 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10019889 [exp] 75 / 2e-15 AT3G19130 450 / 1e-158 RNA-binding protein 47B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G018900 [exp] 340 / 3e-119 AT3G04500 321 / 6e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.013G046900 [exp] 323 / 9e-113 AT3G04500 291 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G279600 [exp] 78 / 3e-16 AT1G17370 469 / 9e-165 oligouridylate binding protein 1B (.1.2) Potri.006G139300 [exp] 77 / 3e-16 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.014G034600 [exp] 77 / 6e-16 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.018G002300 [exp] 75 / 2e-15 AT1G17370 461 / 1e-161 oligouridylate binding protein 1B (.1.2) Potri.003G069000 [exp] 75 / 3e-15 AT1G17370 621 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.001G166100 [exp] 74 / 4e-15 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.002G128100 [exp] 74 / 5e-15 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.011G138400 [exp] 74 / 5e-15 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10000555 pacid=23145679 polypeptide=Lus10000555 locus=Lus10000555.g ID=Lus10000555.BGIv1.0 annot-version=v1.0 ATGTCGTTCCCGCCGTCATCATCAGCCTCATCAGCATACACATACTCAGCTCCGTCGACGTCTTCAACGCAGACGAACAATTCCTACTTTCCGACGCCAT TTCATCTCCAGCAGCAGCCGTACGTCGTCGCAGCCCCTGCAGTGCCAGCTCCACCTCCTGCTATACAGCCAGCGCCCGTTTATCCAGCTGCTCCCGTCGG TCCCGTTTACTCCATCCCGCAATTCCAGCAGGCACATCAATTGTTCCAAAGAGATGCGCAAACGATCACCCCGGAGGCTCTTGAAGGCGTGAAAGCTGCC TTGGCAAGTAGTGAGATTGAGCACAAGGCTGAAACCAAGAAAAAAGCTGTTCCTCGTAAAGCTGCTGGTCAGACTTGGGAGGATCCTACTCTGGCTGAGT GGCCTGAAAATGACTATAGACTGTTTTGTGGTGATCTTGGTAATGAGGTGAACGATGATGTTCTCTCAAAAGCATTTTCAAGGTTCCCTTCATTTAACAT GGCCAAGGTTGTTAGAGATAAGCGAACCGGAAAAACAAAGGGTTATGGATTTGTAAGCTTCTCTAATATTACAGACCTTGCTGCAGCTTTAAAGGAGATG AACGGTAAATATGTCGGCAATCGTCCCATCAAGCTACGCAAGAGCAACTGGAAAGAAAGGACAGACTATGACGCATTAGGAAGACACAAGAACCACCATC AGAAGAAGCCCAAGGTTTCAAAGAAGAGTGTACTCCACAAGTAA
AA sequence Show only first row Show all	>Lus10000555 pacid=23145679 polypeptide=Lus10000555 locus=Lus10000555.g ID=Lus10000555.BGIv1.0 annot-version=v1.0 MSFPPSSSASSAYTYSAPSTSSTQTNNSYFPTPFHLQQQPYVVAAPAVPAPPPAIQPAPVYPAAPVGPVYSIPQFQQAHQLFQRDAQTITPEALEGVKAA LASSEIEHKAETKKKAVPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNITDLAAALKEM NGKYVGNRPIKLRKSNWKERTDYDALGRHKNHHQKKPKVSKKSVLHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Lus10000555 [exp]	0	1
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10011167 [exp]	2.6	0.7735
AT5G19910		MED31	SOH1 family protein (.1.2)		Lus10021434 [exp]	2.6	0.7615
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10042404 [exp]	5.5	0.7712
AT3G16175			Thioesterase superfamily prote...		Lus10006834 [exp]	6.3	0.7565
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10032561 [exp]	7.5	0.7698
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10043076 [exp]	8.8	0.7629
					Lus10012012 [exp]	9.2	0.7657
AT2G30530			unknown protein		Lus10034444 [exp]	9.9	0.7542
AT5G49210			unknown protein		Lus10043148 [exp]	13.0	0.6875
AT4G11560			bromo-adjacent homology (BAH) ...		Lus10008527 [exp]	16.3	0.7239

Compare expression of checked genes

Lus10000555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.