Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08630 534 / 0 THA1 threonine aldolase 1 (.1.2.3.4.5) AT3G04520 518 / 0 THA2 threonine aldolase 2 (.1.2) AT1G07270 54 / 7e-08 Cell division control, Cdc6 (.1) AT2G29680 50 / 3e-06 CDC6, ATCDC6 cell division control 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014658 [exp] 766 / 0 AT1G08630 534 / 0.0 threonine aldolase 1 (.1.2.3.4.5) Lus10009446 [exp] 92 / 7e-20 AT2G29680 584 / 0.0 cell division control 6 (.1.2) Lus10011627 [exp] 91 / 8e-20 AT2G29680 576 / 0.0 cell division control 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G018500 [exp] 580 / 0 AT1G08630 539 / 0.0 threonine aldolase 1 (.1.2.3.4.5) Potri.013G046400 [exp] 577 / 0 AT1G08630 524 / 0.0 threonine aldolase 1 (.1.2.3.4.5) Potri.001G250200 [exp] 67 / 5e-12 AT1G07270 626 / 0.0 Cell division control, Cdc6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF01212 [flax] [poplar] Beta_elim_lyase Beta-eliminating lyase
Representative CDS sequence Show only first row Show all	>Lus10000556 pacid=23145682 polypeptide=Lus10000556 locus=Lus10000556.g ID=Lus10000556.BGIv1.0 annot-version=v1.0 ATGGTGACAAGAACTGTTGATCTGAGATCAGATACTGTAACCAAGCCGTGTGAGGGGATGAGAGCGGCCATGGCAAAAGCAGAGGTTGACGACGATGTAT TGGGGAATGATCCGAGTGCATTGCGATTGGAGACCGAAATGACAAGGATCATGGGCAAGGAAGCTGCGTTGTTCGTTCCTTCAGGGACAATGGGGAACCT AATTAGTGTTCTTGTGCACTGTAACATCAGAGGGAGTGAAGTGATTCTGGGAGACAATTCCCATATCCATATTTACGAGAATGGTGGCATTGCAACGATT GGAGGCGTCCATCCGAGGACTGTGAAGAACAATGATGACGGAACAATGGATTTGGATACGATCGAGGCTAAGATAAGGGACCCTAGAGGGGAGCTTGTGT ATCCCATAACCAGGCTCATCTGTTTGGAGAACTCACATGCCAACACGGGTGGGAGATGCCTATCTGTGGATTATACGGACCGAGTTGGAGAGTTGGCGAA AAAGCACGGTCTGAAGCTTCATATCGATGGGGCTCGCATTTTTAATGCTGCAGCTTCTCTTGGAGTTGCTGTTGACAGGCTTGTACAAGCAGCGGATTCA GTTTCGGTATGCCTATCAAAGGGTATAGGTGCACCAGTTGGATCAGTTATAGTTGGTTCAGAAAGCTTTATCGCCAAGGCTAGGATTCTCAGGAAAACTC TGGGGGGAGGGATGAGACAAGTCGGAATCCTTTGCTCCGCTGCTTTGTTTGCTGTACAACACAATGTTGCAAAGCTACAGAGTGATCACAAGAATGCCAA GACACTGGCAGTTGGACTTAATGACATCAAAGGACTGAAAGTGAATGTTGCAGCTGTGGAAACAAACATTGTTTATGTGGATTTAGAGGAGAGCTCGAAC CTCACGGCTGAGAAACTATACAAGAACTTGCAGCAACATGGTGTGGTTGTAATGTTAGAAGGTCCATACAGAATAAGGATTGTGATCCATCATCAGATCT CCGAAAGCGATGTGCAGTACACTCTATCATGCTTCAAGCTGAACAAATCCCACGTGGAGACTTGCAAGTCAAGAAAGATCCCACCAGTGACCATTTGTGA GTTCTTGAGAATGTGCAGAGTGCTTCATGACCAGGGACTAGTGAAGCTTGGACAGTCTCGTGGCGACGACAAAGCTTAG
AA sequence Show only first row Show all	>Lus10000556 pacid=23145682 polypeptide=Lus10000556 locus=Lus10000556.g ID=Lus10000556.BGIv1.0 annot-version=v1.0 MVTRTVDLRSDTVTKPCEGMRAAMAKAEVDDDVLGNDPSALRLETEMTRIMGKEAALFVPSGTMGNLISVLVHCNIRGSEVILGDNSHIHIYENGGIATI GGVHPRTVKNNDDGTMDLDTIEAKIRDPRGELVYPITRLICLENSHANTGGRCLSVDYTDRVGELAKKHGLKLHIDGARIFNAAASLGVAVDRLVQAADS VSVCLSKGIGAPVGSVIVGSESFIAKARILRKTLGGGMRQVGILCSAALFAVQHNVAKLQSDHKNAKTLAVGLNDIKGLKVNVAAVETNIVYVDLEESSN LTAEKLYKNLQQHGVVVMLEGPYRIRIVIHHQISESDVQYTLSCFKLNKSHVETCKSRKIPPVTICEFLRMCRVLHDQGLVKLGQSRGDDKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Lus10000556 [exp]	0	1
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015745 [exp]	4.5	0.7892
AT5G24660		LSU2	response to low sulfur 2 (.1)		Lus10015594 [exp]	4.5	0.7282
AT1G15780			unknown protein		Lus10025451 [exp]	10.7	0.6389
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10032188 [exp]	10.7	0.7814
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10043095 [exp]	14.3	0.7392
AT5G51040			unknown protein		Lus10043024 [exp]	14.7	0.7414
AT2G21340			MATE efflux family protein (.1...		Lus10042074 [exp]	15.7	0.7066
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10019835 [exp]	15.7	0.7134
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10013952 [exp]	25.6	0.7160
AT3G50910			unknown protein		Lus10041772 [exp]	32.2	0.6944

Compare expression of checked genes

Lus10000556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.