Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32910 82 / 7e-18 HXXXD-type acyl-transferase family protein (.1) AT1G78990 80 / 3e-17 HXXXD-type acyl-transferase family protein (.1) AT5G16410 77 / 5e-16 HXXXD-type acyl-transferase family protein (.1) AT1G31490 53 / 4e-08 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034786 [exp] 135 / 5e-38 AT1G32910 334 / 7e-112 HXXXD-type acyl-transferase family protein (.1) Lus10033327 [exp] 135 / 3e-37 AT1G32910 485 / 8e-170 HXXXD-type acyl-transferase family protein (.1) Lus10006333 [exp] 112 / 6e-29 AT1G32910 428 / 5e-148 HXXXD-type acyl-transferase family protein (.1) Lus10023806 [exp] 49 / 9e-07 AT1G31490 511 / 3e-180 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G003800 [exp] 84 / 1e-18 AT1G32910 533 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.001G128100 [exp] 46 / 1e-05 AT1G31490 607 / 0.0 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10000557 pacid=23169566 polypeptide=Lus10000557 locus=Lus10000557.g ID=Lus10000557.BGIv1.0 annot-version=v1.0 ATGTACGTCCCCTTATCAAGCCTCCCTCCGCCGCCGCCTCCTTCCGCCGCCGACCCCGTCCTCCTCAGCCGCATCTACTACGTCATGTCGGAAGACCTCG CCAGACTCCAGTCCCTCACTTCTAGAACCAAGCTCGAATCCTTCTGCGCGTTCCTCTGGCAGCTCGTCGCCAAATCTTCCCAATCCGACATTGTGTCCAA GATGGGGATCGTGGTCAACGGACGGTCCAGATTGACCGATATGGACAGATACTTCGGGAACGTACTGTCGATCCCTTACGGCGGGGGAGCCGCGGAGGGG CCGGCGTGGGCGCTGTGGAGCAGGCTAGCGGGCTCCGGGGGCGCTGAGCCAAGTGGCGGACGGGGTCCACGAGTTTTTGAAACAAGGGGCAAGCGGGGAG CACTTCATGGGGCTGGTAGACTGGGTGGAAGCCCACAGGCCCCAGCCCGCGATCTCAAAGATTTACAGCTGTGGGGCGGCGGAAGGGCCCGCGTTTGTGG TTTCTTCGGGTCGCGGGTTCCCTGTCGGGGAGGTGGATTTCGGATGGGGTCGGCCGGTTTTCGGGTCGTACCATTTCCCGTGGGGAGGGAGTGCCGGTTA CGTGATGCCGATGCCGAGTCCGAAGAAGGAATCGGGGGATTGGGTGGTGTACATGCATTTGTTCGAGGAGCAGTTGGAGGTAATTGA
AA sequence Show only first row Show all	>Lus10000557 pacid=23169566 polypeptide=Lus10000557 locus=Lus10000557.g ID=Lus10000557.BGIv1.0 annot-version=v1.0 MYVPLSSLPPPPPPSAADPVLLSRIYYVMSEDLARLQSLTSRTKLESFCAFLWQLVAKSSQSDIVSKMGIVVNGRSRLTDMDRYFGNVLSIPYGGGAAEG PAWALWSRLAGSGGAEPSGGRGPRVFETRGKRGALHGAGRLGGSPQAPARDLKDLQLWGGGRARVCGFFGSRVPCRGGGFRMGSAGFRVVPFPVGRECRL RDADAESEEGIGGLGGVHAFVRGAVGGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78990			HXXXD-type acyl-transferase fa...		Lus10000557 [exp]	0	1
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10033327 [exp]	1.4	0.9465
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10013304 [exp]	2.8	0.9115
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10014384 [exp]	3.7	0.9234
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10021505 [exp]	5.7	0.9126
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10029425 [exp]	8.1	0.8631
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10034786 [exp]	8.5	0.9093
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10039686 [exp]	8.7	0.9108
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10037753 [exp]	8.9	0.8871
AT3G01190			Peroxidase superfamily protein...		Lus10007638 [exp]	15.5	0.8370
AT4G21690		ATGA3OX3	ARABIDOPSIS THALIANA GIBBERELL...		Lus10013137 [exp]	16.5	0.8739

Compare expression of checked genes

Lus10000557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.