Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61470 143 / 1e-40 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27820 140 / 4e-39 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G44240 136 / 1e-38 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G80780 136 / 5e-38 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) AT5G10960 135 / 1e-37 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G06450 136 / 3e-37 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT2G32070 134 / 3e-37 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G22250 129 / 4e-35 AtCAF1b CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27890 128 / 9e-35 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G15920 121 / 2e-32 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001651 [exp] 558 / 0 AT1G61470 167 / 4e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017905 [exp] 546 / 0 AT1G06450 162 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10035077 [exp] 505 / 0 AT1G61470 162 / 6e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10008043 [exp] 448 / 1e-159 AT1G06450 165 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10035078 [exp] 395 / 7e-139 AT1G06450 168 / 2e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000327 [exp] 383 / 4e-134 AT1G06450 174 / 1e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10038113 [exp] 305 / 3e-104 AT3G44240 140 / 3e-41 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017894 [exp] 228 / 3e-75 AT1G06450 47 / 8e-07 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10007771 [exp] 207 / 3e-65 AT1G61470 170 / 5e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G038700 [exp] 192 / 3e-59 AT1G61470 182 / 8e-56 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G181100 [exp] 142 / 2e-40 AT1G80780 468 / 1e-168 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) Potri.001G046700 [exp] 140 / 2e-39 AT2G32070 472 / 2e-170 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.018G020900 [exp] 134 / 3e-37 AT2G32070 441 / 2e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G205600 [exp] 132 / 2e-36 AT5G22250 302 / 4e-103 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G187200 [exp] 131 / 5e-36 AT2G32070 403 / 2e-143 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G073000 [exp] 130 / 2e-35 AT3G44260 322 / 5e-111 CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G262500 [exp] 129 / 2e-35 AT2G32070 443 / 5e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.009G161500 [exp] 125 / 5e-34 AT5G22250 387 / 1e-136 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.004G200400 [exp] 124 / 1e-33 AT5G22250 419 / 3e-149 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04857 [flax] [poplar] CAF1 CAF1 family ribonuclease
Representative CDS sequence Show only first row Show all	>Lus10000561 pacid=23169570 polypeptide=Lus10000561 locus=Lus10000561.g ID=Lus10000561.BGIv1.0 annot-version=v1.0 ATGATGGAAGCTCATACAATCCAACCGAATCATTGTTCGAAGAGCACAATAGTGTCGGTGGACACTGAATTCCCAGGTTGCCACCGTCCGATACCGAGGT ACGCTTCCGAGGAACTCCAATTTCAGAACTTGAAGTACAACGTCGGCGCAACCTCTCTGATTCAATTAGGGCTCACTCTGTCCAACTCCGAGGGCACCGT CGGCGGAATCTGGCAATTCAATTTCCAATTCGACCTAGACCACGACCTTCACTGCCCAAATTCAATGCAGTTCTTGATCCTCCACGGCATCGATTTCAAC AAACTGAAAACCCACGGGATTGACCGGGTCAAATTCGGCACGGCGTTCGGGAGGCTGATTGCGACAAGGCGGAGTCCGATTACGTGGATCACTTTCCACG GAGTTTACGATTACGCCTATCTCGTGAAGGCGGTGAGTTTCCGTCCAGTTGCGGAATCATCGGCGGAATTCGTTAATTTTTTGGGGATCGGGTTTGATTC GGTGGTGGATTGCAAGTACATGGCTAAGTTCTATGAAGAGACCGGGAGTGAAATTGGGTTGCAGAAGTTAGCGGATGCTTTGGGGGTTAAGAGAAGAGGG GAGGCTCATACTGCCGCCTCTGATAGTTTGCTGACGGCGTTGGTTTACTTTGAGTTGAAGAAGAAACTGATGCTGTTGGGTGTTGATGAAGAGTCTTACG TTGATTACGTCTATGGAATCAACACCAAAATCTCCAGGAAGCAGAAAGAGCCCCTCTTTCTACCAACTGCTCGACCAGGTCCTGTGTATCATCATCATCA TCATCCTTATCCTCCTCATCTTTATCCTCGTAAGGTGCTGTATCCCATTCCATATCAGCATGGAGTCTTGCCTCCGAATGTGATGATGGGTCGTCGTTGG GTTGATTGCTCATTAGCTCCAGCAGTATTAGTTCCCTCTTTCATCTACCGATAA
AA sequence Show only first row Show all	>Lus10000561 pacid=23169570 polypeptide=Lus10000561 locus=Lus10000561.g ID=Lus10000561.BGIv1.0 annot-version=v1.0 MMEAHTIQPNHCSKSTIVSVDTEFPGCHRPIPRYASEELQFQNLKYNVGATSLIQLGLTLSNSEGTVGGIWQFNFQFDLDHDLHCPNSMQFLILHGIDFN KLKTHGIDRVKFGTAFGRLIATRRSPITWITFHGVYDYAYLVKAVSFRPVAESSAEFVNFLGIGFDSVVDCKYMAKFYEETGSEIGLQKLADALGVKRRG EAHTAASDSLLTALVYFELKKKLMLLGVDEESYVDYVYGINTKISRKQKEPLFLPTARPGPVYHHHHHPYPPHLYPRKVLYPIPYQHGVLPPNVMMGRRW VDCSLAPAVLVPSFIYR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61470			Polynucleotidyl transferase, r...		Lus10000561 [exp]	0	1
AT1G61470			Polynucleotidyl transferase, r...		Lus10035077 [exp]	6.4	0.6877
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Lus10027257 [exp]	17.5	0.6584
AT5G51410			LUC7 N_terminus domain-contain...		Lus10027212 [exp]	18.5	0.6702
AT2G15560			Putative endonuclease or glyco...		Lus10019845 [exp]	29.0	0.6588
AT2G20495			unknown protein		Lus10022916 [exp]	31.0	0.6500
AT5G41620			unknown protein		Lus10003027 [exp]	34.6	0.6232
AT5G52980			unknown protein		Lus10000151 [exp]	52.4	0.6184
AT5G60610			F-box/RNI-like superfamily pro...		Lus10004718 [exp]	61.2	0.6156
AT5G51280			DEAD-box protein abstrakt, put...		Lus10008856 [exp]	66.4	0.5993
AT5G49060			Heat shock protein DnaJ, N-ter...		Lus10037502 [exp]	72.7	0.6058

Compare expression of checked genes

Lus10000561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.