Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61350 883 / 0 Protein kinase superfamily protein (.1) AT4G39110 778 / 0 Malectin/receptor-like protein kinase family protein (.1) AT2G21480 766 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 669 / 0 THE1 THESEUS1, protein kinase family protein (.1) AT3G46290 643 / 0 HERK1 hercules receptor kinase 1 (.1) AT5G24010 592 / 0 Protein kinase superfamily protein (.1) AT1G30570 543 / 1e-180 HERK2 hercules receptor kinase 2 (.1) AT3G04690 518 / 6e-171 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT5G28680 508 / 5e-167 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT2G23200 481 / 5e-157 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021632 [exp] 1359 / 0 AT5G61350 971 / 0.0 Protein kinase superfamily protein (.1) Lus10028805 [exp] 760 / 0 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10017478 [exp] 751 / 0 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10037887 [exp] 678 / 0 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10042844 [exp] 637 / 0 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10028140 [exp] 635 / 0 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10039274 [exp] 610 / 0 AT5G24010 997 / 0.0 Protein kinase superfamily protein (.1) Lus10027509 [exp] 602 / 0 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1) Lus10042537 [exp] 519 / 5e-172 AT3G04690 942 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G061700 [exp] 959 / 0 AT5G61350 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.004G158700 [exp] 791 / 0 AT4G39110 1199 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.009G120400 [exp] 785 / 0 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.001G405500 [exp] 676 / 0 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.001G234200 [exp] 654 / 0 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.011G128000 [exp] 451 / 1e-145 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.009G026600 [exp] 445 / 3e-143 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.017G143049 [exp] 441 / 7e-142 AT5G24010 1071 / 0.0 Protein kinase superfamily protein (.1) Potri.005G055200 [exp] 431 / 1e-137 AT5G28680 1026 / 0.0 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) Potri.008G105500 [exp] 430 / 2e-137 AT3G04690 999 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10000562 pacid=23169571 polypeptide=Lus10000562 locus=Lus10000562.g ID=Lus10000562.BGIv1.0 annot-version=v1.0 ATGGGAGGAAAGAACCTAACCTCCCATGTCCTTTCATTTCTACATATTTTGATCATTACACTCTTCCTTATAAACTCCGTTTCTTCGAAAACTGATGATG ATGACGACAACAATAACAACAGCAATAACAACACCAGTCCTTCTCCAGCTCCAGCTCCAGCTCCTTCGACTCACTTTGTCCCGTACATTCCGGCTGACAA TTACTTACTCAATTGCGGATCGCCCAACGACACGAATCTCGTCGATGGACGAACCTTCAAATCAGATTCCGCAACCATGGCTTACCTCCAAACCAACGAA GATTTCAAAGTATCGGTCGATTCAATCCCTTCCAAACTACTCCCAAACTCCTCCGCCTCGCCTTCTTCACTCCCCTTATTTCGCAACGCGAGGATCTTCA CTTCCGTCGCGAAATTCACCCTCCGAATTGCCAACCCCGGTAGGCATTGGGTTCGCCTCTACTTATACCCGCTGCCCCACTCTCAATGTTCACCTTCATC CTCAGTTTTCAGCGTCACTGCCGGAGGTTCCATCCTCCTACACGAATTCTCCATGAAGGAGAACTCGTCGCCCGAGTTCAAGGAGTACCTGATCGACGTT CCAAGCGATCAGCTCACCATCACTTTCACCCCTAAACTTTCGTGCGCATTTGTGAATGCGTTGGAAGTCGTCTCTACTCCCAACAACTTGATCTCGGATG AAGCATCCGAGATCCCTACCGGCACTTTTGCCGGTCTTTCCAAGTTTTCCCTTCAGGTTTCTCACAGGTTGAACGTTGGTGGGCCTATTATAACTCCTGA AAACGACACACTGTCAAGAACATGGATTCCTGATACGTTGTACAATATTTTCCCTCAAGGAGCTAGCAATATCTCTGTTTCCCCTGACATCATCAGCTTC CCTGAATCAGGAGGAGCTAATCCTTACATCGCTCCAAGAACTGTATACTCCACGGCCGAGAAAATGGCCAATTCCGAAACCTCGAAGCAGAACTTCAACC TCACCTGGAAGCTACCTGTCGACCCGGGTTTCTCTTACCTGATTAGACTCCATTTCTGCGACATTGTCAGCAAGTCTCTTGACGACTTGTATTTCAACGT CTACATCAACGAATTCGTGGGGGGCGGCCTGATCGACCTTTCTTCGGTCGATCGCGCCCTCGACACGGCGTATTACAAGGATTTCGTGGTGGGTCATGGT TTGATTGACAACGGTTCGATCATGGTTCAGGTTGGTCCGGCCTCTGAAACACAATCGGGCCAGATCAACGCGATACTCAATGGTCTGGAGGTTATAAAGA TGAGCCGTTGGGATGGAAGTCTAGACGGCGTTGTTGGGGTTAGCGGGTTGATAGGAAGAGATGTAGTGTGGAAGATTATTGCTGGTATTGGATTGGGAGT TGGTGTGACAGGGTTGCTTTTGATCACATTGATTATGTTGAGATGGAAGAAAAGGCCTAAAGGTTGGGAGAAGAGGAAAAGCTTCTCGTCCTGGCTGCTT CCTCTGCATCGAAGAAGCAGCCAGTTCTCGATTTCCAGCTCGAAGAAATCGAGCGTCTTAAGCTCGAATTCCGGGCTCGGGAAGTTCTTCAGCTTTTCTG AGTTGCAAACAGCAACTCAAAATTTTGAAGAAACCGCAATCCTTGGAGTAGGAGGATTCGGGAAAGTGTACCTTGGAGTGCTGCAAGATGGAACCAAAGT CGCGATCAAACGAGGAATACCGGGATCAGCGCAGGGCATGAACGAGTTCCAGACCGAGATACGGTTGCTCTCCAAGCTAAGACACCGCCACCTCGTTTCG CTCATCGGGTTTTCGGACGAGCAGTCCGAAATGATCCTAGTGTACGAGTACATGTCCAACGGTCCGCTCCGCGACCACCTCTACGGGAAGGCTAAACAGG GGACTCTGTCTTGGAAACAGAGGTTGGAGATATGCATCGGCTCGGCCAGAGGCCTACATTATCTCCACACGGGATTGTCCGAAGCGATAATCCACCGCGA TGTGAAAACCACCAACATCCTACTTGACGAGAATTTGGTTGCGAAAGTGGCCGATTTCGGACTATCGAAGGCCGCTCCGATGGACAGGAGTCCAGTGAGC ACGGCCGTCAAAGGTAGCTTCGGGTATCTCGATCCGGAGTACTTCAGGAGGCAGCAGCTGACCGATAAATCAGATGTGTACTCGTTCGGAGTGCTTTTAT TCGAGGTGTTGTGCGCTAGGCCGGTTTTGAATCCAGTCCTGCCCAGAGAGGAAGTGAACTTAGGGGAGTGGGCTATGAGTTGTTACAGGAGGGGGACATT GGAGAAGATAATTGACCCGGAGATTAAAGGGAGTATAGATAAAGAGTCGTTGAAGAAATTTGTGGAAGCTGCGGAGAAGTGTTTGTCGGAGTACGGGGTG GATAGGCCGGCCATGGGAGATGTGCTGTGGAACTTGGAGTATGCATTGCAGTTGCAGAACGCTTCTTCTTCTTCCGTGAAAAGCAACAGCGAAGAGAATG ATCATGAAGCAAATTTGATTGGTTGTGTTGGGAAGAAGATGGAAGAAAGTGGTGTTGGTGGTGGCGGGGTGGATGATGATTCTCAAGTGATTGGTGGAGT GTCTACCATCATTACGAATTTTGGGGAGGTGGAAGGCAGGTGA
AA sequence Show only first row Show all	>Lus10000562 pacid=23169571 polypeptide=Lus10000562 locus=Lus10000562.g ID=Lus10000562.BGIv1.0 annot-version=v1.0 MGGKNLTSHVLSFLHILIITLFLINSVSSKTDDDDDNNNNSNNNTSPSPAPAPAPSTHFVPYIPADNYLLNCGSPNDTNLVDGRTFKSDSATMAYLQTNE DFKVSVDSIPSKLLPNSSASPSSLPLFRNARIFTSVAKFTLRIANPGRHWVRLYLYPLPHSQCSPSSSVFSVTAGGSILLHEFSMKENSSPEFKEYLIDV PSDQLTITFTPKLSCAFVNALEVVSTPNNLISDEASEIPTGTFAGLSKFSLQVSHRLNVGGPIITPENDTLSRTWIPDTLYNIFPQGASNISVSPDIISF PESGGANPYIAPRTVYSTAEKMANSETSKQNFNLTWKLPVDPGFSYLIRLHFCDIVSKSLDDLYFNVYINEFVGGGLIDLSSVDRALDTAYYKDFVVGHG LIDNGSIMVQVGPASETQSGQINAILNGLEVIKMSRWDGSLDGVVGVSGLIGRDVVWKIIAGIGLGVGVTGLLLITLIMLRWKKRPKGWEKRKSFSSWLL PLHRRSSQFSISSSKKSSVLSSNSGLGKFFSFSELQTATQNFEETAILGVGGFGKVYLGVLQDGTKVAIKRGIPGSAQGMNEFQTEIRLLSKLRHRHLVS LIGFSDEQSEMILVYEYMSNGPLRDHLYGKAKQGTLSWKQRLEICIGSARGLHYLHTGLSEAIIHRDVKTTNILLDENLVAKVADFGLSKAAPMDRSPVS TAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVLLFEVLCARPVLNPVLPREEVNLGEWAMSCYRRGTLEKIIDPEIKGSIDKESLKKFVEAAEKCLSEYGV DRPAMGDVLWNLEYALQLQNASSSSVKSNSEENDHEANLIGCVGKKMEESGVGGGGVDDDSQVIGGVSTIITNFGEVEGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61350			Protein kinase superfamily pro...		Lus10000562 [exp]	0	1
AT2G46890			Protein of unknown function (D...		Lus10010291 [exp]	3.0	0.9611
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032593 [exp]	3.5	0.9782
AT2G04305			Magnesium transporter CorA-lik...		Lus10010751 [exp]	3.9	0.9746
AT1G78060			Glycosyl hydrolase family prot...		Lus10019099 [exp]	4.0	0.9614
AT1G58070			unknown protein		Lus10019953 [exp]	4.5	0.9748
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029638 [exp]	4.9	0.9727
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Lus10022610 [exp]	8.7	0.9317
AT3G52790			peptidoglycan-binding LysM dom...		Lus10027407 [exp]	9.9	0.9539
AT5G07220		ATBAG3	BCL-2-associated athanogene 3 ...		Lus10023279 [exp]	11.2	0.9635
AT2G03200			Eukaryotic aspartyl protease f...		Lus10025702 [exp]	11.4	0.9665

Compare expression of checked genes

Lus10000562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.