Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07720 716 / 0 Galactosyl transferase GMA12/MNN10 family protein (.1) AT1G74380 704 / 0 XXT5 xyloglucan xylosyltransferase 5 (.1) AT1G18690 622 / 0 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G02500 514 / 0 ATXT2, XXT2 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) AT3G62720 501 / 9e-176 ATXT1, XXT1 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) AT4G37690 312 / 3e-102 Galactosyl transferase GMA12/MNN10 family protein (.1) AT2G22900 305 / 6e-99 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G38310 103 / 3e-26 Galactosyl transferase GMA12/MNN10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021631 [exp] 871 / 0 AT5G07720 766 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10019076 [exp] 758 / 0 AT5G07720 744 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10015721 [exp] 753 / 0 AT5G07720 741 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10037516 [exp] 510 / 2e-179 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037519 [exp] 509 / 4e-179 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10002870 [exp] 505 / 2e-177 AT4G02500 779 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037514 [exp] 395 / 6e-135 AT3G62720 615 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Lus10037520 [exp] 318 / 2e-107 AT4G02500 449 / 3e-159 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10011550 [exp] 321 / 3e-105 AT2G22900 571 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G061800 [exp] 757 / 0 AT5G07720 730 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.012G068300 [exp] 742 / 0 AT5G07720 755 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.008G208000 [exp] 511 / 6e-180 AT4G02500 773 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025300 [exp] 509 / 6e-179 AT4G02500 775 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025100 [exp] 481 / 3e-168 AT3G62720 674 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Potri.007G005900 [exp] 306 / 1e-99 AT2G22900 593 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.014G006100 [exp] 306 / 1e-99 AT2G22900 592 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF05637 [flax] [poplar] Glyco_transf_34 galactosyl transferase GMA12/MNN10 family
Representative CDS sequence Show only first row Show all	>Lus10000563 pacid=23169568 polypeptide=Lus10000563 locus=Lus10000563.g ID=Lus10000563.BGIv1.0 annot-version=v1.0 ATGGGCCAAGACAATAATAGCAGCACCTTCATTCCCCAGAAGCGATCCAGCGGCGCCGGCGGAGCTGGAGCTGGCTCAGTCTTACCCACCACCGCCAACG GCAGAGCAGCTGGAGTTAGGACCATGATCCCACGTGGCAGGCAGATCCATAAGACCTTCAACAACATCAAGATCACTATCCTCTGTGGCTTCGTCACCGT CACCTTCGGCATCATCCTCATCCTCCGCGGCACCATCGGCATCGGCAACCTCTCCAGCTCCGAAGCCGACGCTGTCAACCAGAACATCATCGAGGAAACC AACCGGATCCTCGCCGAGATCCGCTCCGACAAGGACCCGACCGATCCAACCTCTGAAGAAGAACCTGAATTCCTCTCCCCTAATGCCACCTACTCCCTGG GTCCTAAAATCGTCGATTGGGATAGTCAGCGAAAGGTATGGCTCTCTCAAAACCCCGAATTCCCCAATTCCTTCAATGGGAAAGCAAGGATTTTGCTGCT AACAGGATCCCCGCCGAACCCTTGTGACAACCCGATTGGGGATCATTACTTGTTGAAAGCAGTCAAGAACAAGATTGATTACTGTAGGATTCATGGGATT GAGATTGTTTACAATATGGCTCATTTGGATAAGGAGCTAGCAGGTTATTGGGCGAAATTGCCCATGATTAGAAGGCTGATGCTTTCTCATCCTGAGGTGG AGTGGATTTGGTGGATGGACAGTGATGCAATGTTCACTGATATGGTGTTTGAGATTCCTTTGGCTAAGTATGCTGAACATGATTTGGTGATTCATGGCTA TCCGGACTTGCTCTTCGAGCAGAAGTCATGGATTGCGCTGAACACGGGTAGTTTCCTGTTTCGGAACTGCCAATGGAGTCTTGATTTGCTTGATACTTGG GCTCCCATGGGTCCTAAGGGACCGATTCGAGAGGAGGCTGGGAAGGTACTTACTGCTAACTTGAAAGGGAGGCCGGCATTTGAAGCGGACGATCAGTCTG CGTTAATCTACTTGTTGTTGTCTCAGAAAGAGATTTGGATGGACAAAGTGTATGTAGAGAATCAGTATTACTTGCACGGGTACTGGTTGGGATTGGTGGA TCGGTACGAGGAGATGATGGAGAAGTATCATCCCGGGTTGGGAGATGAGAGGTGGCCTTTCGTTACTCATTTCGTGGGGTGCAAGCCTTGTGGGAGCTAT GGGGATTATCCAGTGGAGCAGTGCTTGAAGAGTATGGAGAGGGCTTTCAATTTTGCCGACAATCAAGTGCTTAAGTTTTACGGGTTCGGACACAGAGGGC TGTTGAGCCCCAAGATCAAGAGGATTACTAACGATACTGCAACTCCGTTGGAGTATGTAGACCAAGTTGATATTCGTCGCCCGGTCCATGGGAAGAAGGA GAGCTTATCTAGTGAAACAAAGAGCTAG
AA sequence Show only first row Show all	>Lus10000563 pacid=23169568 polypeptide=Lus10000563 locus=Lus10000563.g ID=Lus10000563.BGIv1.0 annot-version=v1.0 MGQDNNSSTFIPQKRSSGAGGAGAGSVLPTTANGRAAGVRTMIPRGRQIHKTFNNIKITILCGFVTVTFGIILILRGTIGIGNLSSSEADAVNQNIIEET NRILAEIRSDKDPTDPTSEEEPEFLSPNATYSLGPKIVDWDSQRKVWLSQNPEFPNSFNGKARILLLTGSPPNPCDNPIGDHYLLKAVKNKIDYCRIHGI EIVYNMAHLDKELAGYWAKLPMIRRLMLSHPEVEWIWWMDSDAMFTDMVFEIPLAKYAEHDLVIHGYPDLLFEQKSWIALNTGSFLFRNCQWSLDLLDTW APMGPKGPIREEAGKVLTANLKGRPAFEADDQSALIYLLLSQKEIWMDKVYVENQYYLHGYWLGLVDRYEEMMEKYHPGLGDERWPFVTHFVGCKPCGSY GDYPVEQCLKSMERAFNFADNQVLKFYGFGHRGLLSPKIKRITNDTATPLEYVDQVDIRRPVHGKKESLSSETKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07720			Galactosyl transferase GMA12/M...		Lus10000563 [exp]	0	1
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Lus10042201 [exp]	1.0	0.9394
AT2G41905			unknown protein		Lus10026313 [exp]	2.6	0.8524
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10026404 [exp]	2.8	0.8808
AT5G04270			DHHC-type zinc finger family p...		Lus10038701 [exp]	3.9	0.8373
AT5G05480			Peptide-N4-(N-acetyl-beta-gluc...		Lus10017437 [exp]	8.0	0.8341
AT4G18030			S-adenosyl-L-methionine-depend...		Lus10011045 [exp]	8.1	0.8605
AT5G07720			Galactosyl transferase GMA12/M...		Lus10021631 [exp]	9.0	0.8788
AT1G51540			Galactose oxidase/kelch repeat...		Lus10034826 [exp]	9.8	0.8711
AT3G05520			Subunits of heterodimeric acti...		Lus10020651 [exp]	10.5	0.8133
AT4G31490			Coatomer, beta subunit (.1)		Lus10027160 [exp]	12.3	0.8127

Compare expression of checked genes

Lus10000563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.