Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61370 549 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G60960 156 / 7e-42 PNM1 PPR protein localized to the nucleus and mitochondria 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 124 / 4e-30 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49730 124 / 4e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G52640 117 / 4e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 114 / 5e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62470 113 / 1e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G04130 112 / 1e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G46100 111 / 3e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 110 / 2e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000207 [exp] 889 / 0 AT5G61370 566 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021630 [exp] 889 / 0 AT5G61370 566 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017862 [exp] 143 / 4e-37 AT5G60960 645 / 0.0 PPR protein localized to the nucleus and mitochondria 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034673 [exp] 142 / 6e-37 AT5G60960 639 / 0.0 PPR protein localized to the nucleus and mitochondria 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 115 / 2e-27 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 114 / 7e-27 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041193 [exp] 114 / 8e-27 AT3G22670 531 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 114 / 1e-26 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040633 [exp] 114 / 2e-26 AT3G61520 586 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G068400 [exp] 606 / 0 AT5G61370 580 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G133400 [exp] 157 / 3e-42 AT5G60960 637 / 0.0 PPR protein localized to the nucleus and mitochondria 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050500 [exp] 138 / 5e-35 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.018G038300 [exp] 136 / 1e-34 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 136 / 2e-34 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.019G021200 [exp] 130 / 3e-32 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046100 [exp] 129 / 5e-32 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G257300 [exp] 129 / 5e-32 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050180 [exp] 128 / 1e-31 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271200 [exp] 127 / 2e-31 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10000564 pacid=23169575 polypeptide=Lus10000564 locus=Lus10000564.g ID=Lus10000564.BGIv1.0 annot-version=v1.0 ATGCATTGCTTGCTGAGGTGTAGATGGCTTTGCTTCGTGTCGAAAAACACAGCTACCAAGTGTGTCTTCCGCGAGCTGTGTTCTACCGCGTCTCGGGATC AAGTTCTTGTAGACTTGCGAGAGGTCTGCAGAGTCGTGTCTAGTTCCATTGGCGGTTTAGATGACTTGGAATGTAGTCTGAATCGTTTTACCATCAACCT ATCGTCTTCTTTAGTCAGACAAATCATACATTGTTGTAAAGACGAGGCACCCACAAGGAGATTGTTGAGATTCTTTCTGTGGTCAAGTAGAAATTTCAAT GCCAAAGACGAGGACTTTAATCAGATTCTTCGAGTAATGGCAGAGAAGAAGGACCATAAAGCAGTCGAGATTCTGATATCGGACATGGGGAAACAGGGTC GAGCAATGGAAGCACAGACTTTTATTGCTGTTGCTGAGGCATTGGTTAAACTTGGAAGAGAAGATGGAGCATTGGGTTTGTTTAAGAACTTAGAGAAGTT CAAATGCGCGCAAGATAGTGTAACTGTGAGTGCCATTGTAACATCGCTCTGTTCCAAAGGGCATGCTAAGAAAGCACAAGGAGTTGTTTGGCATCACAAG GACAAGATTTCTAGTATGATGCCGTGCATTTATCGTAGTCTTGTACACGGGTGGTCAGTGCAGGAGAATGCAAAGGAAGTGCGAAAGGTTATCAAAGAGA TGAAGGGAGATGGGGTAAGTCCTGATTTGTTTTGTTTCAATGCGCTGATCAGATGTCTATGTGAGAAGAATGTCAAAGAGAATCCTTCTGGACTAGTTCC TGACACTTTGAATGTGATGATGGAAATGAGAACGCATTGTATTCAGCCGAACTCAATTAGCTACAATATCTTGCTTTCCTGCCTTGGGAGGACAAGGAGA GTTAAGGAATCCGTTAAGGTACTTGAATTGATGAAGAGATCAGGCTGTGAGCCTGATTGGCATAGCTATTATCTGGTTGTGAAAGTAATGTATTTGACTG GAAGATTTGGTAAAGGTAATCAGCTTCTGAATGAAATGTTTGCCGAAGGATTGGTACCTGATCGCAAGTTTTACAACGATTTGATTGGCGTTCTATGTGG AGTTGAAAGACCGAATTTTGCTCTGGAGTTGTTCGAACGAATGAAGAGAAGTTCGTTGGGTGGGTATGGCCCAGTGTACGATGTACTGATCCCAAAGCTT TGTAGGGGAGGGGACTTTCAAAAGGGTAGAGAACTATGGGAGGAAGCTGTGAATACAGGAGTGACCCTTTTGTGCTCAGAAGATGTGCTGGATCCTTCAA TTACTCAAGTTTTCATCCCGAAAAGAAAAGAGCAGGAATTGGTCATCCTTAAGGATTCCGCACCTCCTAGGAAGCCTGTCCAGTTGAAGAAGTTTAGTGC AGCAAGGAAGTCTAGAAAGGAGCCGGAAAAGACGGCAAGAAGCATGAGGAAAGCCAAGAAGTAG
AA sequence Show only first row Show all	>Lus10000564 pacid=23169575 polypeptide=Lus10000564 locus=Lus10000564.g ID=Lus10000564.BGIv1.0 annot-version=v1.0 MHCLLRCRWLCFVSKNTATKCVFRELCSTASRDQVLVDLREVCRVVSSSIGGLDDLECSLNRFTINLSSSLVRQIIHCCKDEAPTRRLLRFFLWSSRNFN AKDEDFNQILRVMAEKKDHKAVEILISDMGKQGRAMEAQTFIAVAEALVKLGREDGALGLFKNLEKFKCAQDSVTVSAIVTSLCSKGHAKKAQGVVWHHK DKISSMMPCIYRSLVHGWSVQENAKEVRKVIKEMKGDGVSPDLFCFNALIRCLCEKNVKENPSGLVPDTLNVMMEMRTHCIQPNSISYNILLSCLGRTRR VKESVKVLELMKRSGCEPDWHSYYLVVKVMYLTGRFGKGNQLLNEMFAEGLVPDRKFYNDLIGVLCGVERPNFALELFERMKRSSLGGYGPVYDVLIPKL CRGGDFQKGRELWEEAVNTGVTLLCSEDVLDPSITQVFIPKRKEQELVILKDSAPPRKPVQLKKFSAARKSRKEPEKTARSMRKAKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61370			Pentatricopeptide repeat (PPR)...		Lus10000564 [exp]	0	1
AT5G07900			Mitochondrial transcription te...		Lus10040817 [exp]	1.0	0.9008
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10008830 [exp]	9.3	0.8171
AT5G55230		ATMAP65-1	microtubule-associated protein...		Lus10043178 [exp]	12.7	0.8592
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10012071 [exp]	14.1	0.8278
AT1G18450		ATARP4	actin-related protein 4 (.1)		Lus10042980 [exp]	15.5	0.8523
AT2G37560		ATORC2	origin recognition complex sec...		Lus10024412 [exp]	17.7	0.8212
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10035017 [exp]	17.9	0.8512
AT3G26782			Tetratricopeptide repeat (TPR)...		Lus10031989 [exp]	22.6	0.8437
AT3G15140			Polynucleotidyl transferase, r...		Lus10009194 [exp]	23.1	0.8505
AT2G35540			DNAJ heat shock N-terminal dom...		Lus10027316 [exp]	25.7	0.8357

Compare expression of checked genes

Lus10000564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.