Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61380 429 / 3e-144 AtTOC1, TOC1, APRR1, ARR1 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) AT2G46790 129 / 4e-32 TL1, APRR9 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) AT5G24470 130 / 5e-32 APRR5 pseudo-response regulator 5 (.1) AT5G60100 124 / 2e-30 APRR3 pseudo-response regulator 3 (.1.2.3) AT5G02810 114 / 2e-26 APRR7, PRR7 pseudo-response regulator 7 (.1) AT4G16110 96 / 2e-20 GARP ARR2 response regulator 2 (.1) AT1G67710 92 / 1e-19 GARP ARR11 response regulator 11 (.1) AT3G16857 91 / 6e-19 GARP ARR1 response regulator 1 (.1.2) AT4G31920 90 / 1e-18 GARP ARR10 response regulator 10 (.1) AT2G25180 88 / 4e-18 GARP ARR12 response regulator 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021629 [exp] 1016 / 0 AT5G61380 326 / 4e-103 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10015720 [exp] 731 / 0 AT5G61380 470 / 3e-160 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10019077 [exp] 729 / 0 AT5G61380 491 / 2e-168 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10008879 [exp] 132 / 1e-32 AT5G24470 316 / 4e-98 pseudo-response regulator 5 (.1) Lus10023229 [exp] 131 / 1e-32 AT5G24470 270 / 4e-85 pseudo-response regulator 5 (.1) Lus10015571 [exp] 131 / 3e-32 AT2G46790 365 / 1e-117 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) Lus10032934 [exp] 130 / 5e-32 AT5G24470 356 / 2e-114 pseudo-response regulator 5 (.1) Lus10023230 [exp] 117 / 3e-27 AT5G24470 300 / 2e-92 pseudo-response regulator 5 (.1) Lus10008878 [exp] 115 / 9e-27 AT5G24470 296 / 8e-91 pseudo-response regulator 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G061900 [exp] 646 / 0 AT5G61380 474 / 2e-161 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Potri.012G005900 [exp] 137 / 4e-34 AT5G24470 305 / 9e-94 pseudo-response regulator 5 (.1) Potri.015G002300 [exp] 133 / 6e-33 AT5G24470 301 / 1e-92 pseudo-response regulator 5 (.1) Potri.014G106000 [exp] 126 / 2e-30 AT5G24470 271 / 3e-81 pseudo-response regulator 5 (.1) Potri.002G179800 [exp] 120 / 2e-28 AT5G24470 269 / 2e-80 pseudo-response regulator 5 (.1) Potri.010G215200 [exp] 117 / 1e-27 AT5G02810 441 / 2e-144 pseudo-response regulator 7 (.1) Potri.008G046200 [exp] 117 / 3e-27 AT5G02810 452 / 1e-148 pseudo-response regulator 7 (.1) Potri.010G105600 [exp] 93 / 1e-19 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.008G181000 [exp] 92 / 2e-19 AT1G67710 383 / 5e-127 response regulator 11 (.1) Potri.010G053100 [exp] 92 / 2e-19 AT1G67710 380 / 2e-126 response regulator 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Lus10000566 pacid=23169573 polypeptide=Lus10000566 locus=Lus10000566.g ID=Lus10000566.BGIv1.0 annot-version=v1.0 ATGGACACTGGGAAGGGGAAGCTTACGAACATGGATTGTGCTGGTGCTGGTACGAGTGCTAACGGAGGAGATGGTTTCATCGACAGAAGTAAAGTGAGGA TTTTGCTGTGTGATAATGATTCTTCCAGCTCTGAGGAGGTCTACACTCTTCTTATGAAGTGTTCTTATCAGGTTACATCAGTAAAGTCTGCTAGGCAGGT GATTGATGCCTTGAATGCGGAAGGTCTGGATATTGATATCATACTTGCAGAAGTTGATCTTCCAATGAAGAAGGGGATGAAGATGTTGAAGTACATTACT CGGCATAAGGATTTGCAGCGAATTCCTGTGATCATGATGTCAGCACAAGATGAGGTTTCCACTGTAGTCAAGTGCTTGAGATTTGGAGCAGCTGATTATC TTGTGAAGCCATTACGTAGCAATGAACTGTTAACCTTGTGGACGCACATGTGGCGAAGGAGAAGGATGCTTGGGCTAGCTGAGAAAAGCATCTTGAACTA TGAGTTGGACCCTGTGGCATCAGACCATAGTGATGCTAATACGAACAGTACCACTTTGTTCACTGACGAGACAAATGAAATTTCAAGGAAGAACAATGAT CCTGAGACTGTGACATCGACTCATATAGATGCTGAACTGGTTATGATTGCCGATGCTGTTGCTATCCCTGAACCTTTGCCTCAAAATCCTCGGGAATATC GGCCAGCTGTCCCAGGAATCACAGATCGTCGACGAGCAGGACAATTCTCAGCTGGCCCAAAGAAGAGTGAGCTGAAGATTGGGGTATCTTCTGCGTTCTT TACTTATGTGAAATCAAGCCCAGTGAAAAGCATTCCCCAAAGTGTGGTTCAGATTGAGGAGAATGGGTTGAGGATGGAACTTCAAGAGTGTACTGATGCT CAACTACCAGAGAATGGAGAGGCTTGGGAAAGTTATTCACAGGGAGATGACTTCCGTAGCAGTGCTAGCGTTCCTGATTCTCTTTCCGTGGAAAGATCTT GCACTCCTCCCGGATCCAGAGAATATTCTGAACTGAATTTCAATGAAGACATCCTTGGATATCAAAGAAATGAACATCAGTCTCAAGCCTTGGGTTTACA AACTCAAAATGTCTATTCTTACTACATGAATGGGGTTATGAATGAAGTTATGATGCCATCGCCACATCTATACCAGAAGAATATGCAGGAACTTCAGACC CAGGTGTCACAATACAATCATCTTCCGCAGCATAGGCGTCACATGCCCGGACTGCCACCGTTTCCGTATTACCCAGCTGGCATGTGCTACCAACGTGGTC AAATGTCTGGTAATAGTTCGTTGCAGCATACATTTGGAAGTCAATCATCGGCTGAAACGAAAAATAACAAAGTAGATAGAAGAGAGGCGGCACTGATCAA GTTTAGGCAGAAAAGGAAGGAGCGTTGCTTTGATAAGAAGATTAGGTACGTTAACCGGAAAAAGCTTGCTGAAAGGAGGCCTCGTGTACGTGGACAGTTT GTCAGGAAGTTGAATGGTGTAAATGTGGATCTTAATGGACTCCCTTCTGCCACTGATTGTGAAGATGAGGAAGAAGACGATGATGAAATCGCATTGAGGG ACTGTGAGGACAGAGGCACCATGATATGA
AA sequence Show only first row Show all	>Lus10000566 pacid=23169573 polypeptide=Lus10000566 locus=Lus10000566.g ID=Lus10000566.BGIv1.0 annot-version=v1.0 MDTGKGKLTNMDCAGAGTSANGGDGFIDRSKVRILLCDNDSSSSEEVYTLLMKCSYQVTSVKSARQVIDALNAEGLDIDIILAEVDLPMKKGMKMLKYIT RHKDLQRIPVIMMSAQDEVSTVVKCLRFGAADYLVKPLRSNELLTLWTHMWRRRRMLGLAEKSILNYELDPVASDHSDANTNSTTLFTDETNEISRKNND PETVTSTHIDAELVMIADAVAIPEPLPQNPREYRPAVPGITDRRRAGQFSAGPKKSELKIGVSSAFFTYVKSSPVKSIPQSVVQIEENGLRMELQECTDA QLPENGEAWESYSQGDDFRSSASVPDSLSVERSCTPPGSREYSELNFNEDILGYQRNEHQSQALGLQTQNVYSYYMNGVMNEVMMPSPHLYQKNMQELQT QVSQYNHLPQHRRHMPGLPPFPYYPAGMCYQRGQMSGNSSLQHTFGSQSSAETKNNKVDRREAALIKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQF VRKLNGVNVDLNGLPSATDCEDEEEDDDEIALRDCEDRGTMI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10000566 [exp]	0	1
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10021629 [exp]	1.0	0.8961
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10034322 [exp]	3.5	0.8685
					Lus10014061 [exp]	6.6	0.8379
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10005923 [exp]	6.9	0.8673
AT1G49230			RING/U-box superfamily protein...		Lus10006788 [exp]	8.4	0.8502
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10024067 [exp]	8.7	0.8662
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023281 [exp]	9.7	0.8542
AT1G72100			late embryogenesis abundant do...		Lus10000723 [exp]	12.2	0.8533
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10040909 [exp]	13.0	0.8148
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10041449 [exp]	14.1	0.8452

Compare expression of checked genes

Lus10000566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.