Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61390 473 / 4e-164 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G07710 468 / 2e-162 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G74390 449 / 2e-154 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT4G39810 257 / 6e-83 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015719 [exp] 705 / 0 AT5G61390 541 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10019078 [exp] 687 / 0 AT5G61390 528 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10016807 [exp] 253 / 1e-80 AT4G39810 297 / 2e-101 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10022503 [exp] 251 / 5e-80 AT4G39810 305 / 2e-104 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G062000 [exp] 575 / 0 AT5G61390 543 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.007G088500 [exp] 275 / 3e-90 AT4G39810 311 / 3e-108 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.005G079100 [exp] 273 / 6e-89 AT4G39810 344 / 3e-120 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00929 [flax] [poplar] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Lus10000567 pacid=23169565 polypeptide=Lus10000567 locus=Lus10000567.g ID=Lus10000567.BGIv1.0 annot-version=v1.0 ATGGCTACTACTAGCAGCTACATGAGCAATGTCGACCAGTCGGAGATAGCATTCTTCGACGTGGAAACCACCGTCCCTACCCGACCCGGCCAGGGTTTCG CCCTTCTGGAGTTCGGAGCCATACTGGTCTGTCCCAAAACACTAGTGGAGCTCCACAGCTACTCCACCTTGCTCCGCCCTTCAGATCCTTCTCTAATCTC CTCCTTGTCCGTCCGCTGCAACGGCATCTCTCCCGACTCCGTCTCCACCGCACCTTCTTTCTCAGACATAGCCGACACCGTCTTCCACCTACTCCACGGG AGGACTTGGGCAGGTCACAACATTCTGAGGTTTGATTGTGTTCGGATTAGAGAAGCTTTCAAGGGTATAGGGAGATCGCCGCCGGAGCCTAAAGGGACAA TTGATTCGCTGGCTTTGCTGACTCGTAAGTTTGGAAGGAGAGCTGGTAATATGAAGATGGCTTCTCTGGCAACTTACTTTGGACTTGGGAAGCAAACACA CAGGAGCTTGGATGATGTTCGGATGAATCTTGAAGTTGTCAAATACTGTGCTACTGTCTTGTTCCTGGAGTCAAGTCTCCCAGGGACATTCCCAGAAAAA ACTTGGGTTTCACCTAATGTCACTACTAGAAGTCATAACCATGGGAAATCGATCATTGATGCAAAGGGATCGAACGAGAATACTCCTTCGAGTTCAAAGT CGAATACTACACCCGTTCTGTCTCATGGTGTTCACCCGGTATTATCTCTTCTTACTACTAGCGGCATTGTTGAAGATGCAGACCCTTTGGATCTGAGCAT GGTCAGAGATGAGATGAATGCCGAACCTCTGCAAAGGGATGTCAATATGGAAGAGATTCTTGTGACAGAATCGGCCGAAATCCCAGAAACGAGCAGTAAT CATTTGGTGACATTGCAGCTTGATGAAGTTTCTGCTCCTTCATTACGGGCAGCTTATGTTACAATTCCGTGGAGAGGTCAAAAGATGAATTTGCTACACA ACAATGTTCAGTTTGAGCTATATTGCCCTGGTTTAAAGGTGCGGTTTGGACTCAGCTCGAAGTTTACAGATCATGCTGGAAGACCGAGGTTGAGTCTCCT GGTGGATGCATCTCCGATTTTGTGTACAGTTCTGGAGGCATGTAATGAAGTCGCCCAAAGTCTATTCCAAAGTTCAGGCAGCGGATCAAATTGGAAACAT GTTGTGATACGACATGATAACTACACCAACTACCCTAACGTCAGGCTCAACATACCTACTTTGGTAGACGGGGATATCGCTCAATATGCGACAGAGATGT ATCTGAAAGAACGATCAGGAACCCTGCAAAAGCTCGATTTCAGCAAGTGCGAGCAATTGTTGAAGCCAGGAAACTTAATTGATGCTTACCTCTCCCTGGA TACCTACGATTATCAAAACAGTGCCGGTATCCGATTAGTGGCGAAGAAGTTGGCAATCCATAATGAGTCACTGCAGAAGCAGAAAACTCTCTAA
AA sequence Show only first row Show all	>Lus10000567 pacid=23169565 polypeptide=Lus10000567 locus=Lus10000567.g ID=Lus10000567.BGIv1.0 annot-version=v1.0 MATTSSYMSNVDQSEIAFFDVETTVPTRPGQGFALLEFGAILVCPKTLVELHSYSTLLRPSDPSLISSLSVRCNGISPDSVSTAPSFSDIADTVFHLLHG RTWAGHNILRFDCVRIREAFKGIGRSPPEPKGTIDSLALLTRKFGRRAGNMKMASLATYFGLGKQTHRSLDDVRMNLEVVKYCATVLFLESSLPGTFPEK TWVSPNVTTRSHNHGKSIIDAKGSNENTPSSSKSNTTPVLSHGVHPVLSLLTTSGIVEDADPLDLSMVRDEMNAEPLQRDVNMEEILVTESAEIPETSSN HLVTLQLDEVSAPSLRAAYVTIPWRGQKMNLLHNNVQFELYCPGLKVRFGLSSKFTDHAGRPRLSLLVDASPILCTVLEACNEVAQSLFQSSGSGSNWKH VVIRHDNYTNYPNVRLNIPTLVDGDIAQYATEMYLKERSGTLQKLDFSKCEQLLKPGNLIDAYLSLDTYDYQNSAGIRLVAKKLAIHNESLQKQKTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61390			Polynucleotidyl transferase, r...		Lus10000567 [exp]	0	1
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10024820 [exp]	1.4	0.8833
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10001183 [exp]	4.9	0.8391
AT2G28680			RmlC-like cupins superfamily p...		Lus10005880 [exp]	6.9	0.7736
AT5G59070			UDP-Glycosyltransferase superf...		Lus10040757 [exp]	7.5	0.7629
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10013641 [exp]	8.0	0.7593
AT5G52340		ATEXO70A2	exocyst subunit exo70 family p...		Lus10021283 [exp]	9.3	0.8003
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Lus10034940 [exp]	13.6	0.7894
AT3G19240			Vacuolar import/degradation, V...		Lus10019860 [exp]	15.5	0.7373
AT2G19110		ATHMA4, HMA4	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10006955 [exp]	16.3	0.7022
AT1G55760			BTB/POZ domain-containing prot...		Lus10027101 [exp]	24.4	0.7572

Compare expression of checked genes

Lus10000567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.