Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25840 165 / 3e-52 Protein of unknown function (DUF1677) (.1) AT1G79770 124 / 2e-36 Protein of unknown function (DUF1677) (.1) AT4G14819 78 / 4e-19 Protein of unknown function (DUF1677) (.1) AT3G22540 74 / 2e-17 Protein of unknown function (DUF1677) (.1) AT1G72510 73 / 2e-16 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) AT1G54095 73 / 2e-16 Protein of unknown function (DUF1677) (.1) AT5G20670 72 / 5e-16 Protein of unknown function (DUF1677) (.1) AT2G25780 72 / 6e-16 Protein of unknown function (DUF1677) (.1) AT2G09970 62 / 3e-12 Protein of unknown function (DUF1677) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006044 [exp] 328 / 2e-116 AT5G25840 175 / 2e-56 Protein of unknown function (DUF1677) (.1) Lus10037569 [exp] 156 / 7e-49 AT5G25840 173 / 1e-55 Protein of unknown function (DUF1677) (.1) Lus10011427 [exp] 155 / 5e-48 AT5G25840 172 / 5e-55 Protein of unknown function (DUF1677) (.1) Lus10037683 [exp] 91 / 4e-23 AT1G72510 134 / 2e-40 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10008118 [exp] 90 / 8e-23 AT1G72510 157 / 1e-49 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10013156 [exp] 88 / 6e-22 AT1G72510 157 / 2e-49 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10015670 [exp] 83 / 2e-20 AT1G72510 139 / 7e-43 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10006107 [exp] 72 / 2e-16 AT3G22540 155 / 2e-50 Protein of unknown function (DUF1677) (.1) Lus10010564 [exp] 72 / 2e-16 AT3G22540 151 / 1e-48 Protein of unknown function (DUF1677) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G188700 [exp] 167 / 3e-53 AT1G79770 157 / 2e-49 Protein of unknown function (DUF1677) (.1) Potri.003G050200 [exp] 157 / 4e-49 AT5G25840 152 / 3e-47 Protein of unknown function (DUF1677) (.1) Potri.018G045600 [exp] 147 / 5e-45 AT5G25840 157 / 3e-49 Protein of unknown function (DUF1677) (.1) Potri.003G067800 [exp] 92 / 2e-23 AT1G72510 194 / 5e-64 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Potri.001G166900 [exp] 91 / 2e-23 AT1G72510 190 / 2e-62 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Potri.006G219100 [exp] 81 / 1e-19 AT1G72510 131 / 7e-40 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Potri.006G237300 [exp] 81 / 2e-19 AT2G25780 122 / 6e-36 Protein of unknown function (DUF1677) (.1) Potri.008G154500 [exp] 72 / 2e-16 AT3G22540 133 / 1e-41 Protein of unknown function (DUF1677) (.1) Potri.010G086000 [exp] 71 / 3e-16 AT4G14819 136 / 3e-43 Protein of unknown function (DUF1677) (.1) Potri.015G031700 [exp] 67 / 9e-15 AT4G14819 75 / 5e-19 Protein of unknown function (DUF1677) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07911 [flax] [poplar] DUF1677 Protein of unknown function (DUF1677)
Representative CDS sequence Show only first row Show all	>Lus10000571 pacid=23161755 polypeptide=Lus10000571 locus=Lus10000571.g ID=Lus10000571.BGIv1.0 annot-version=v1.0 ATGGAGAGTCTCCAACGAACTGTGTCGGACATATCCTTCCAGCTATCCACGGCGGCCAAGGTTTCCGAACAGGACGACGTTACACCGACGACGACGACGA CAACAACAACAGCAACGGTAAAGCAACTGCAGCCGATAGCAGAGGTGGCGGCAGAGGACGCCAAGTGCGAGTGCTGCGGGATGTCGGAGGAGTTCACACC TGGCTACATCAAGAAGGTGAAAGAGAGGTTCATGGGCAAGATGGTGTGCGGATTATGCTCCGAGGCCATCCAGAGGGAGACAGAGAAAAACGGAGGGAAT CGAGACGAGGCTGTCAAGGATCACATGAGCGCCTGTGTTCGTTTCAATAAGATAGGGAGGGCTTATCCTGTGCTTTACCAGGCTGATGCTGTTAGGGAAA TACTTCAGAAAAAGAAGAAGAACAGCTTGCAGGCCTCATCAGGTAATAATGGTGGTCTGGCTAGGAGCTCCAGCTGTATTCCGGCCATTTCTACTAGGGA CCTTGCTACTGCTACTGCTACTGCTGGCCGGGTTCCAAACAGCAGGTTCCTCAACTAA
AA sequence Show only first row Show all	>Lus10000571 pacid=23161755 polypeptide=Lus10000571 locus=Lus10000571.g ID=Lus10000571.BGIv1.0 annot-version=v1.0 MESLQRTVSDISFQLSTAAKVSEQDDVTPTTTTTTTTATVKQLQPIAEVAAEDAKCECCGMSEEFTPGYIKKVKERFMGKMVCGLCSEAIQRETEKNGGN RDEAVKDHMSACVRFNKIGRAYPVLYQADAVREILQKKKKNSLQASSGNNGGLARSSSCIPAISTRDLATATATAGRVPNSRFLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25840			Protein of unknown function (D...		Lus10000571 [exp]	0	1
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032073 [exp]	1.0	0.9808
AT2G24400			SAUR-like auxin-responsive pro...		Lus10033348 [exp]	1.7	0.9676
AT5G25840			Protein of unknown function (D...		Lus10006044 [exp]	2.0	0.9628
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014606 [exp]	2.4	0.9708
					Lus10021242 [exp]	3.7	0.9454
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032074 [exp]	3.9	0.9573
AT4G36945			PLC-like phosphodiesterases su...		Lus10019339 [exp]	4.2	0.9468
AT3G10720			Plant invertase/pectin methyle...		Lus10008937 [exp]	5.2	0.9329
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10030975 [exp]	5.7	0.9289
AT3G03190		ATGSTF6, ATGSTF...	ARABIDOPSIS GLUTATHIONE-S-TRAN...		Lus10040393 [exp]	5.7	0.9367

Compare expression of checked genes

Lus10000571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.