Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11650 471 / 4e-166 alpha/beta-Hydrolases superfamily protein (.1) AT1G73480 324 / 2e-107 alpha/beta-Hydrolases superfamily protein (.1) AT1G18360 317 / 6e-106 alpha/beta-Hydrolases superfamily protein (.1) AT2G39420 132 / 2e-35 alpha/beta-Hydrolases superfamily protein (.1) AT1G52760 129 / 5e-34 LysoPL2 lysophospholipase 2 (.1) AT1G11090 125 / 1e-32 alpha/beta-Hydrolases superfamily protein (.1) AT5G16120 124 / 6e-32 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G39410 120 / 9e-31 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G77420 119 / 6e-30 alpha/beta-Hydrolases superfamily protein (.1) AT2G39400 113 / 2e-28 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006043 [exp] 668 / 0 AT5G11650 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10009679 [exp] 322 / 4e-107 AT1G73480 525 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10009041 [exp] 302 / 3e-99 AT1G73480 511 / 3e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10035909 [exp] 130 / 2e-34 AT1G52760 568 / 0.0 lysophospholipase 2 (.1) Lus10025754 [exp] 129 / 4e-34 AT1G52760 564 / 0.0 lysophospholipase 2 (.1) Lus10041441 [exp] 130 / 5e-34 AT1G77420 496 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Lus10040328 [exp] 125 / 1e-32 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10034331 [exp] 126 / 2e-32 AT1G77420 499 / 8e-178 alpha/beta-Hydrolases superfamily protein (.1) Lus10009169 [exp] 121 / 4e-31 AT5G16120 490 / 2e-175 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G045800 [exp] 537 / 0 AT5G11650 540 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G237200 [exp] 521 / 0 AT5G11650 483 / 4e-171 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G041800 [exp] 313 / 7e-104 AT1G73480 510 / 3e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G031900 [exp] 312 / 2e-103 AT1G73480 504 / 1e-177 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G046500 [exp] 144 / 1e-39 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G124000 [exp] 139 / 3e-37 AT1G77420 510 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G175000 [exp] 128 / 1e-33 AT1G52760 554 / 0.0 lysophospholipase 2 (.1) Potri.003G059200 [exp] 126 / 3e-33 AT1G52760 560 / 0.0 lysophospholipase 2 (.1) Potri.017G114800 [exp] 126 / 1e-32 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G049000 [exp] 123 / 7e-32 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF12146 [flax] [poplar] Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence Show only first row Show all	>Lus10000572 pacid=23161754 polypeptide=Lus10000572 locus=Lus10000572.g ID=Lus10000572.BGIv1.0 annot-version=v1.0 ATGTCGACGGTGGCAGAGATGGAACCCCTTACTTCCGGTGCGAGCAATCGCATCATTCCCATCCTCAGGGTTTTGAGGAAATCCCTCATTTTCATCCAAT CCATCGTCCTCGCCTTCCTTCTTCTCCTCTTCCCTCGCCGCCGACCTTCTTCTTCTTCTTCTTCTACTTCTTCCTCTGTGTCGTCTGATTCGTCCTCTGC GCAGAATTCCGTCAAGCGCCGATCTATGTGGAGGTTAGAGGAAGAGGATAACGCCAGGAGGAGAGCCCTTGCCGAGGTTATTGATATGACCGTCGATGGT GACACTCGGTGCCGGTTGAACACGTTTTTGTTCTTCGGTGTCAAGCGAAATGCTCTCTTCTGCCGCTCCTGGCTCCCTGTTGACGACGATATGAAGGGGA TTTTGATCATCATCCATGGCCTGAACGAGCACGGTGGAAGGTATGCTCCCTTTGCGAAGCAATTAACCGCGGCCAACTTTGGAGTCTATGCAATGGACTG GATAGGTCATGGTGGAAGCGATGGCTTGCACGGATATGTTCCTTCTCTAGACCACGTTATTGCAGATACTGGGGCTTTCTTGGAGAAGATGAAGTCTGAG CACCCTGGAGTACCATGCTTCCTTTTTGGTCACTCAACTGGCGGAGCTGTTGTTTTGAAGGCGGCCTCATATCCTCGCATTCAAGTGATGGTGGAGGGAA TTGTGCTAACCTCACCTGCTTTGCGTGTTAAGCCTGCACATCCCATTGTTGCGGCGGTGGCACCTATATTTTCTCTAGTGGCTCCAAGGTTCCAATTCAA AGGAGCAAACAAGAGGGGGATTCCAGTTTCAAGGGATCCTGCAGCATTGCTGGCAAAGTACTCTGATCCCCTGGTATACACAGGTCCCATTAGGGTTCGG ACTGGCCATGAAATATTGCGCATCTCATCCTTCTTGATGCGCAATATAAAGTCTGTGACGGTTCCATTCTTCATCCTTCACGGGACAGCTGACAGAGTGA CTGATCCTCTAGCATCACAGGACCTGTACAATGAAGCTGCGTCCAAGTACAAAGACATAAGGCTGTACGAAGGGTTCTTGCATGACCTTCTGTTTGAACC TGAGAGGGAGGAAATCGGTGAGGAAATAATCAACTGGATGGAGAAGAAGTTAGCTACTGGTGGTGGTGAAAATGTTTGTAGTCCTCGCTGGTAG
AA sequence Show only first row Show all	>Lus10000572 pacid=23161754 polypeptide=Lus10000572 locus=Lus10000572.g ID=Lus10000572.BGIv1.0 annot-version=v1.0 MSTVAEMEPLTSGASNRIIPILRVLRKSLIFIQSIVLAFLLLLFPRRRPSSSSSSTSSSVSSDSSSAQNSVKRRSMWRLEEEDNARRRALAEVIDMTVDG DTRCRLNTFLFFGVKRNALFCRSWLPVDDDMKGILIIIHGLNEHGGRYAPFAKQLTAANFGVYAMDWIGHGGSDGLHGYVPSLDHVIADTGAFLEKMKSE HPGVPCFLFGHSTGGAVVLKAASYPRIQVMVEGIVLTSPALRVKPAHPIVAAVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVR TGHEILRISSFLMRNIKSVTVPFFILHGTADRVTDPLASQDLYNEAASKYKDIRLYEGFLHDLLFEPEREEIGEEIINWMEKKLATGGGENVCSPRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11650			alpha/beta-Hydrolases superfam...		Lus10000572 [exp]	0	1
AT1G56170	CCAAT	NF-YC2, ATHAP5B...	"nuclear factor Y, subunit C2"...		Lus10024515 [exp]	3.7	0.8721
AT5G11650			alpha/beta-Hydrolases superfam...		Lus10006043 [exp]	7.3	0.8627
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10009944 [exp]	23.8	0.8737
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10027969 [exp]	27.3	0.8805
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10005151 [exp]	59.0	0.8516
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10024270 [exp]	59.8	0.8618
AT3G22890		APS1	ATP sulfurylase 1 (.1)		Lus10006629 [exp]	61.8	0.8432
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10032926 [exp]	63.7	0.8639
AT1G24560			unknown protein		Lus10013022 [exp]	64.1	0.8587
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10037131 [exp]	67.3	0.8607

Compare expression of checked genes

Lus10000572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.