Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32870 144 / 2e-44 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT2G25770 112 / 7e-32 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006042 [exp] 261 / 1e-90 AT4G32870 145 / 3e-45 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10005477 [exp] 123 / 3e-36 AT2G25770 172 / 2e-55 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10026898 [exp] 84 / 3e-21 AT2G25770 128 / 2e-38 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10028262 [exp] 53 / 6e-09 AT2G25770 75 / 2e-17 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10040227 [exp] 52 / 2e-08 AT2G25770 75 / 6e-17 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G236800 [exp] 161 / 1e-50 AT4G32870 179 / 1e-57 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.006G237000 [exp] 147 / 2e-45 AT4G32870 180 / 9e-59 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.006G237100 [exp] 143 / 4e-44 AT4G32870 178 / 8e-58 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.018G046100 [exp] 114 / 2e-32 AT2G25770 188 / 1e-61 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.008G063900 [exp] 55 / 6e-10 AT4G32870 80 / 2e-19 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.010G193200 [exp] 48 / 8e-08 AT2G25770 59 / 4e-12 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.006G237050 [exp] 0 / 1 AT4G32870 0 / 1 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF10604 [flax] [poplar] Polyketide_cyc2 Polyketide cyclase / dehydrase and lipid transport
Representative CDS sequence Show only first row Show all	>Lus10000573 pacid=23161757 polypeptide=Lus10000573 locus=Lus10000573.g ID=Lus10000573.BGIv1.0 annot-version=v1.0 ATGGAGGAAGCACAACAAGTCCAAGAAATGCAGCAGCCAAAGAGATGGGAAGGCAAAGCGACCGCGACGGGGAAACTAAAATCATCAGCAAGGCAAGTGT GGCTGTTTTTCGACCGCGACTTCTGCAGTCTCCACAAGTGGTCCCCAAATCTGGACACGTGTCACCAGCTGGAAGGTGTGGTCGGGCAGCCCGGATTGGT CCGTTACTGCGCTTCCAAGTCCAGTTGGTGCAAGGAACGACTGCTCGCCATTGATCCATCCGACCGATGCTTGAGCTACGAGATTCTCGACAACAACATC GGCTTCGGATCCTACGTTGCCACCATCAGGGTTGTCGATGATCAGCCGCCCGGAGGTTGCTGCAGGATTGAATGGTCGTTCGTTGCTGAGCCGGTCACCG GTTGGACCTTAGAGGGTTTGCATTCCTACCTCACTTCCAGCTTGGATTACATGGCTTCCAAAATCCAGGAGAGCTTACTGTGTAATGGAATTTAA
AA sequence Show only first row Show all	>Lus10000573 pacid=23161757 polypeptide=Lus10000573 locus=Lus10000573.g ID=Lus10000573.BGIv1.0 annot-version=v1.0 MEEAQQVQEMQQPKRWEGKATATGKLKSSARQVWLFFDRDFCSLHKWSPNLDTCHQLEGVVGQPGLVRYCASKSSWCKERLLAIDPSDRCLSYEILDNNI GFGSYVATIRVVDDQPPGGCCRIEWSFVAEPVTGWTLEGLHSYLTSSLDYMASKIQESLLCNGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32870			Polyketide cyclase/dehydrase a...		Lus10000573 [exp]	0	1
					Lus10003556 [exp]	1.0	0.9724
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10011063 [exp]	2.4	0.9546
AT4G10790			UBX domain-containing protein ...		Lus10027684 [exp]	2.4	0.9637
AT2G17700		STY8	serine/threonine/tyrosine kina...		Lus10004153 [exp]	4.5	0.9433
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10017347 [exp]	4.9	0.9258
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10013012 [exp]	5.9	0.9278
					Lus10033727 [exp]	6.5	0.9003
					Lus10025141 [exp]	6.9	0.9316
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Lus10021887 [exp]	7.2	0.8730
AT4G32870			Polyketide cyclase/dehydrase a...		Lus10006042 [exp]	8.4	0.9324

Compare expression of checked genes

Lus10000573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.