Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23755 101 / 3e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019660 [exp] 166 / 1e-53 AT2G23755 82 / 2e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G032900 [exp] 127 / 5e-38 AT2G23755 146 / 3e-45 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000575 pacid=23154165 polypeptide=Lus10000575 locus=Lus10000575.g ID=Lus10000575.BGIv1.0 annot-version=v1.0 ATGGCTACACTCTTCGCTTGCTCTGCCTCCGTCCAGTTAAACGACCCCGATTGGTACTTTTGGTTCCCTCTCTATATCGCCGCCTCCGCTGTAAACTTGG CATCGTGGACAAGATTCAACGACGTTAGAAGAAGGGTTGCGAGGTTGACTTTCTGGGGTGGTCAGCTCTTGATGTGGAAAGTTGTGGTGGAGGATCTGCT TGTGAAGGGAACGGCGGCGTTTTGGTGTTTGGATCTGAGTGAGAGGGTTGTGAGGGAGAAAGTTGGGAGTGGGATTGTTGTTGCCTCCATGGCTCTGCAT TTGGTCAAGGCTAGTTGTGATGATAATGATGGGATTCAGTTTTGGTCTCCCTTTTGTGTTCTTTGCTGTGAATGGTGGAGAAATGAAGTTTTGAATGTTT TATATATATGA
AA sequence Show only first row Show all	>Lus10000575 pacid=23154165 polypeptide=Lus10000575 locus=Lus10000575.g ID=Lus10000575.BGIv1.0 annot-version=v1.0 MATLFACSASVQLNDPDWYFWFPLYIAASAVNLASWTRFNDVRRRVARLTFWGGQLLMWKVVVEDLLVKGTAAFWCLDLSERVVREKVGSGIVVASMALH LVKASCDDNDGIQFWSPFCVLCCEWWRNEVLNVLYI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23755			unknown protein		Lus10000575 [exp]	0	1
AT1G73890			Bifunctional inhibitor/lipid-t...		Lus10042984 [exp]	1.0	0.7941
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10013794 [exp]	3.5	0.7579
AT2G13570	CCAAT	NF-YB7	"nuclear factor Y, subunit B7"...		Lus10020899 [exp]	5.3	0.7828
AT3G48950			Pectin lyase-like superfamily ...		Lus10027516 [exp]	6.6	0.7246
AT2G39040			Peroxidase superfamily protein...		Lus10021957 [exp]	9.5	0.7179
AT2G03360			Glycosyltransferase family 61 ...		Lus10037124 [exp]	10.5	0.6765
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Lus10012991 [exp]	15.3	0.7139
AT2G43870			Pectin lyase-like superfamily ...		Lus10011417 [exp]	16.5	0.7139
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10021881 [exp]	17.3	0.6626
					Lus10012983 [exp]	17.5	0.7097

Compare expression of checked genes

Lus10000575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.