Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G032600 [exp] 67 / 1e-14 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000576 pacid=23154166 polypeptide=Lus10000576 locus=Lus10000576.g ID=Lus10000576.BGIv1.0 annot-version=v1.0 ATGATGAGTTGCAACTCAAAGATCTGTGTAGATGTAGCAGTAAATGATCAGATCACTAGAAGAAGGTCAGCGAAACCAGAGTGGGACAAGTCACAAGCCA AGTTCATCATCAACCTCTGCATTGACAAACAAAGGCAACAACTTGCAGCTTCCGACCCTAACAACAACGATACTGCAATCTTAGATGAGGAGAAGAGGGG GTTCGGGTCGAGGAATGATACTAGCAGCCCGGATAGCTACGTGTGGAGGCAGAGGTTCCTGAGGAGCTATACCTTCACAAGGGAGGAAGATTACTTGGGG AAGAAGAAACAGATGGTGGTAGGTTTGTTGAGGAGGGTTTTGAAGAATGTGGAGAGATGGATCAACAAGGCAAAGGGTATTAAGAAGGTTGGCGATTCTT GTTTTTTCGCTGTTTTTGGTGTTGCGACGATGTGA
AA sequence Show only first row Show all	>Lus10000576 pacid=23154166 polypeptide=Lus10000576 locus=Lus10000576.g ID=Lus10000576.BGIv1.0 annot-version=v1.0 MMSCNSKICVDVAVNDQITRRRSAKPEWDKSQAKFIINLCIDKQRQQLAASDPNNNDTAILDEEKRGFGSRNDTSSPDSYVWRQRFLRSYTFTREEDYLG KKKQMVVGLLRRVLKNVERWINKAKGIKKVGDSCFFAVFGVATM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000576 [exp]	0	1
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032259 [exp]	7.7	0.6822
AT3G12720	MYB	ATMYB67, AtY53	myb domain protein 67 (.1)		Lus10001226 [exp]	15.2	0.7241
AT2G27550		ATC	centroradialis (.1)		Lus10043385 [exp]	15.3	0.7308
AT4G18450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10013958 [exp]	34.1	0.6217
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020250 [exp]	43.9	0.6460
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10013551 [exp]	48.0	0.6600
AT5G14920			Gibberellin-regulated family p...		Lus10014519 [exp]	48.7	0.6976
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10008698 [exp]	49.4	0.6372
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029332 [exp]	51.9	0.6543
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016210 [exp]	70.6	0.6619

Compare expression of checked genes

Lus10000576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.