Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23770 480 / 1e-162 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT2G33580 395 / 6e-129 Protein kinase superfamily protein (.1) AT3G01840 199 / 3e-55 Protein kinase superfamily protein (.1) AT3G21630 196 / 3e-54 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT1G51940 192 / 1e-52 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G07070 178 / 2e-49 Protein kinase superfamily protein (.1) AT1G61860 177 / 2e-49 Protein kinase superfamily protein (.1) AT3G58690 177 / 2e-49 Protein kinase superfamily protein (.1) AT1G20650 176 / 5e-49 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT4G35600 174 / 6e-48 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019661 [exp] 1141 / 0 AT2G23770 483 / 8e-164 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10022488 [exp] 437 / 9e-146 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10008586 [exp] 434 / 2e-143 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10016299 [exp] 347 / 1e-110 AT2G23770 368 / 3e-119 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016794 [exp] 238 / 1e-72 AT2G23770 219 / 2e-66 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10041323 [exp] 245 / 3e-72 AT2G23770 202 / 2e-56 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016793 [exp] 244 / 8e-72 AT3G21630 222 / 9e-64 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10037389 [exp] 238 / 1e-69 AT2G33580 202 / 1e-56 Protein kinase superfamily protein (.1) Lus10022487 [exp] 242 / 3e-68 AT5G66631 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G032100 [exp] 751 / 0 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128200 [exp] 714 / 0 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 456 / 1e-152 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.005G128300 [exp] 417 / 6e-138 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G040000 [exp] 395 / 1e-129 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.010G078700 [exp] 283 / 9e-87 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160600 [exp] 281 / 8e-86 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.001G332800 [exp] 265 / 2e-79 AT3G01840 471 / 4e-158 Protein kinase superfamily protein (.1) Potri.009G010300 [exp] 251 / 1e-74 AT2G23770 234 / 3e-68 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032300 [exp] 240 / 1e-70 AT2G33580 247 / 6e-73 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10000577 pacid=23154162 polypeptide=Lus10000577 locus=Lus10000577.g ID=Lus10000577.BGIv1.0 annot-version=v1.0 ATGAAGTTTCTTTCTTCATCATTCTTCTATCTTTTCCTCTGTGTCCTGTATTGCTTCTCGTTTGTTGTTCAGGCTCAGCAGGCTTACATTGGGCAAGGCA CAAATGACTGCTCCACCACAGCAAACTCAGCTCTAGGATACTCCTGCAATGGCGTCAACAGGACCTGCCAAAGTTACCTCACCTTCAGAGCTCAACCTCC TTACACAACTGTCGCTTCGATCTCGACACTCTTGGGGTCAGACCCTTCTCAGCTCGCTGCCATCAACTCCGTCCCCGATGAAAATTCCGCCTTTGGTACC GACCGGTTAGTACTTGTTCCGGTCACTTGCTCATGTTCTGGTTCGTACTATAGAGCAAACTCGTCCTTTGTTGTTAGAAATAGAGACAACTTGTACCTTA TTGCTAATGAAACTTTACAAGGTCTGTCGACTTGCCAAGCCATTGGGAATGGCAGCAGGACAGTGAATATATTTCCAGGTCAAACACTTGAGATTCCTCT TAGATGTGCTTGCCCTACAAGGAACCAAACTGATCAAGGGATCAATTATCTGTTGAGTTATCTGGTCACTTGGGGAGATACTGTTTCAGCAGCTACCTTG AGATTTGGTGGTGATTTGAGATCGGCACTCGAAGCTAATGGACTTAGTGAGGATAGTGCCACAGTTTTCCCTTTCACAACCCTCCTAATTCCACTCCAAA CCCCACCTTCTAGTAACCAAACGGTAGCTCCATCACCGCCTCCTCCACCGGTTTCTACTCCACGGACGCCTACTCCTACTCCTGCATCGAGTTCGAGCTC AAACAAATCGTGGGTTTATGTCATTTCCGGGGTTTTGGGAGGAGTTGCTTTTACGTTGGCTATTGGAACAATAGCTTTCTTTATGTGCTTCCGCAAAAGG AAGGTAAATTTAGATCCTTTAGCAACGTCTGAAAGCTATGAAGGTGTGGAGAAGCCAATGAAGAAAGTGCATGATGAAGAGTCTGACATTTTTTTCATGG AGAGTATATCCAGCATTGCTCACTCCATCCAGGTTTACACATTTGATGAGCTAGTAGCTGCAACTGATAATTTCAGCCCCAAATGCTTGATCAAAGGGTC TGTGTATCGCGGCAAGATCAAAGGCGATCTCGCTGCGATCAAGAGAATCGACGACGGAGTGGATGGGTCGGAGGAGATAAATTTACTCAACAAGATAAAC CATTCCAACATCATTCGTCTCTCTGGTGTCTGTTCCCATGATGGACACTGGTATCTTGTCTATGAGTTTGCTTCTAATGGAGCTTTGAGTGACTGGATAT ATAATTCATCCAATAACAATGGTGGTGGGAAGAAAAAGGCATTGAGTTGGGCTCAAAGAATCCAGATAACTCTGGATGTAGCTTTGGGACTTGACTATCT ACACAGTTTCACAACACCTCCACAGGTCCACAAGGACATCAAAGCCGGGAATGTGCTTCTCGACAGTGATCTCAGGGCTAAAGTATCCGGGTTCGCACAG GCGAGACCGGCTGCAGGAGAGGATGGCGAGGGTTTCAACCTGACAAGGCACATCTTCGGGACGAAAGGCTATATGGCTCCCGAGTATTTGGAGAACGGTC TGGTGTCCACGAAGATGGATGTTTTTGCATTTGGGATTGTTCTGCTGGAGATGATCACTGGGAAAGAAGCTGCTACATTGTATAGGGAACGAGGAGGAGC TGCTAATGGGTTGTTATCAGATATTTTGAACCAAGAGAATCCAGAGCAGTTCATGGACCCGTCGATGGAAGGAAGCTATCCATTGGACATTGCTGGATTT GTAGTGAAGCTGGTTGATGGCTGTCTAAACAAGAACTCGTCGGACCGACCAGCTATGAATGAGATTGTGCAGACTCTTTCTAGAATCTTGACTGCTTCAT TGTCCTGGGAGTTGTCTAATAACATCTCGGGTTATAGGGATCTCAGATATGGCTAG
AA sequence Show only first row Show all	>Lus10000577 pacid=23154162 polypeptide=Lus10000577 locus=Lus10000577.g ID=Lus10000577.BGIv1.0 annot-version=v1.0 MKFLSSSFFYLFLCVLYCFSFVVQAQQAYIGQGTNDCSTTANSALGYSCNGVNRTCQSYLTFRAQPPYTTVASISTLLGSDPSQLAAINSVPDENSAFGT DRLVLVPVTCSCSGSYYRANSSFVVRNRDNLYLIANETLQGLSTCQAIGNGSRTVNIFPGQTLEIPLRCACPTRNQTDQGINYLLSYLVTWGDTVSAATL RFGGDLRSALEANGLSEDSATVFPFTTLLIPLQTPPSSNQTVAPSPPPPPVSTPRTPTPTPASSSSSNKSWVYVISGVLGGVAFTLAIGTIAFFMCFRKR KVNLDPLATSESYEGVEKPMKKVHDEESDIFFMESISSIAHSIQVYTFDELVAATDNFSPKCLIKGSVYRGKIKGDLAAIKRIDDGVDGSEEINLLNKIN HSNIIRLSGVCSHDGHWYLVYEFASNGALSDWIYNSSNNNGGGKKKALSWAQRIQITLDVALGLDYLHSFTTPPQVHKDIKAGNVLLDSDLRAKVSGFAQ ARPAAGEDGEGFNLTRHIFGTKGYMAPEYLENGLVSTKMDVFAFGIVLLEMITGKEAATLYRERGGAANGLLSDILNQENPEQFMDPSMEGSYPLDIAGF VVKLVDGCLNKNSSDRPAMNEIVQTLSRILTASLSWELSNNISGYRDLRYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23770			protein kinase family protein ...		Lus10000577 [exp]	0	1
AT1G11300			protein serine/threonine kinas...		Lus10023391 [exp]	2.6	0.9811
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10031388 [exp]	5.1	0.9787
AT5G62150			peptidoglycan-binding LysM dom...		Lus10015011 [exp]	5.5	0.9757
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10029533 [exp]	5.6	0.9659
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10038983 [exp]	6.5	0.9719
AT3G54200			Late embryogenesis abundant (L...		Lus10032671 [exp]	7.1	0.9771
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Lus10017212 [exp]	7.5	0.9603
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030589 [exp]	9.8	0.9771
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019832 [exp]	10.8	0.9732
AT4G35110			Arabidopsis phospholipase-like...		Lus10007582 [exp]	11.0	0.9595

Compare expression of checked genes

Lus10000577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.