Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022487 [exp] 143 / 1e-38 AT5G66631 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016793 [exp] 142 / 1e-38 AT3G21630 222 / 9e-64 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10019662 [exp] 93 / 2e-21 AT2G33580 198 / 3e-57 Protein kinase superfamily protein (.1) Lus10008586 [exp] 42 / 0.0005 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10041574 [exp] 41 / 0.0006 AT3G01840 383 / 1e-124 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G032300 [exp] 94 / 1e-21 AT2G33580 247 / 6e-73 Protein kinase superfamily protein (.1) Potri.005G128501 [exp] 82 / 1e-18 AT2G23770 71 / 4e-14 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128401 [exp] 69 / 2e-13 AT2G33580 196 / 1e-57 Protein kinase superfamily protein (.1) Potri.010G078700 [exp] 62 / 8e-11 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160600 [exp] 56 / 7e-09 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.008G160501 [exp] 55 / 7e-09 AT2G23770 66 / 3e-12 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000578 pacid=23154164 polypeptide=Lus10000578 locus=Lus10000578.g ID=Lus10000578.BGIv1.0 annot-version=v1.0 ATGGAGCTAATCTCAAAACTAATCTTCTTGGTTCTGCTCTCTTGTTGTCATTCTGCAACTCTTGTCATATCACAGTCACCACCACCAAAAACCACTGGAT TCACCTGCTCTGATTCTGAACCAACTCACCCATGCAAAACCTACGTATCATACCATGTCCAGCCACCAAACTTCATGAACCTCAGCAGCATCTCCGACCT CTTCGGAGTCAGCCAGTTGTCGATAGCAACAAGATACAGTTCACTTTCCAATCTCACTTGCCAAATCAGAGGAGGTGACAGTTTCCGACCGGTCTGCAAC CAGGTGACCGAGTGGTGTTTCCTCTCTTCTGTCAGTGCCCTTCCAGGGCTTAGAGAGAGAACGGAATCGAGTCGCTCATTATGGTGTACTGGCGACACCC TCCGGAGTGTTGCTGACGAGTTAGGTGCATCCTCGGTCGATGACATTGTGATGGCTAACAACTACAGGGAATTCGACGAGCCAATCAATAATCCAGTTCT GATTCCGGTAGCTGGATTACCGGTTCTGAAAAAGCCGACGAATCCATCTGCACAGCGAAGGAAAGGATCAAATCACAGCTGGATCATCATCATCATAAGT GTCATTGTAGCTTCTTCAGGATTGGCTGTGTTTGCATTCGGTGTAGTCCTCTTGGAACTGCTTTCTGGGAAGAAGGCAATGGTTGGTGAGGTTTCACTGT TGGCTAAGGAAATCAAAACTGTCATGGAAGTTTCAGATAGAAGGGTGGAGAAATTTAGAAATTGGATGGATCCTTAG
AA sequence Show only first row Show all	>Lus10000578 pacid=23154164 polypeptide=Lus10000578 locus=Lus10000578.g ID=Lus10000578.BGIv1.0 annot-version=v1.0 MELISKLIFLVLLSCCHSATLVISQSPPPKTTGFTCSDSEPTHPCKTYVSYHVQPPNFMNLSSISDLFGVSQLSIATRYSSLSNLTCQIRGGDSFRPVCN QVTEWCFLSSVSALPGLRERTESSRSLWCTGDTLRSVADELGASSVDDIVMANNYREFDEPINNPVLIPVAGLPVLKKPTNPSAQRRKGSNHSWIIIIIS VIVASSGLAVFAFGVVLLELLSGKKAMVGEVSLLAKEIKTVMEVSDRRVEKFRNWMDP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000578 [exp]	0	1
					Lus10005473 [exp]	1.0	0.8718
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10026816 [exp]	4.2	0.8334
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10029685 [exp]	19.5	0.8597
AT1G54730			Major facilitator superfamily ...		Lus10002258 [exp]	19.7	0.8532
AT2G23770			protein kinase family protein ...		Lus10021889 [exp]	29.5	0.8262
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10024196 [exp]	35.2	0.7968
					Lus10003863 [exp]	43.1	0.7833
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10023648 [exp]	47.1	0.8034
AT1G57790			F-box family protein (.1)		Lus10013738 [exp]	48.0	0.8001
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10002435 [exp]	56.6	0.8037

Compare expression of checked genes

Lus10000578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.