Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78850 381 / 1e-129 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G78860 374 / 1e-126 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G78830 365 / 4e-123 Curculin-like (mannose-binding) lectin family protein (.1) AT1G16905 346 / 5e-116 Curculin-like (mannose-binding) lectin family protein (.1) AT1G78820 339 / 6e-113 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT5G35370 109 / 1e-25 S-locus lectin protein kinase family protein (.1) AT4G32300 104 / 1e-23 SD2-5 S-domain-2 5 (.1) AT4G00340 98 / 1e-21 RLK4 receptor-like protein kinase 4 (.1) AT3G51710 91 / 1e-19 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT3G12000 86 / 4e-18 S-locus related protein SLR1, putative (S1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022495 [exp] 524 / 0 AT1G78860 363 / 1e-122 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10024343 [exp] 99 / 5e-22 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10002917 [exp] 98 / 2e-21 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10032944 [exp] 97 / 4e-21 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1) Lus10024348 [exp] 96 / 9e-21 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10039315 [exp] 95 / 2e-20 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10000249 [exp] 94 / 4e-20 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10014371 [exp] 92 / 9e-20 AT5G03700 469 / 2e-162 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10007603 [exp] 89 / 1e-18 AT4G21380 942 / 0.0 receptor kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G110200 [exp] 471 / 4e-165 AT1G78860 398 / 4e-136 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110500 [exp] 457 / 1e-159 AT1G78850 404 / 8e-139 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110300 [exp] 444 / 1e-154 AT1G78860 404 / 1e-138 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110000 [exp] 439 / 1e-152 AT1G78850 424 / 1e-146 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.001G391300 [exp] 437 / 9e-152 AT1G78850 391 / 2e-133 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.010G005900 [exp] 432 / 1e-149 AT1G78850 371 / 1e-125 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G066200 [exp] 379 / 9e-129 AT1G78830 387 / 2e-131 Curculin-like (mannose-binding) lectin family protein (.1) Potri.001G391200 [exp] 304 / 2e-101 AT1G78860 296 / 2e-98 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.004G061900 [exp] 120 / 5e-29 AT4G32300 402 / 3e-126 S-domain-2 5 (.1) Potri.016G132500 [exp] 107 / 4e-25 AT3G51710 464 / 2e-161 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10000579 pacid=23154167 polypeptide=Lus10000579 locus=Lus10000579.g ID=Lus10000579.BGIv1.0 annot-version=v1.0 ATGTGGCATCAGCAGCAATCCCTCCTCTGTTTCTTCTTCTTCTTCTTCTTCCTTGCGACCGAAGCAACCGTCCCTCCATCCGCCCGATTCTCCTTCTCAA ACTCGGGCGAATTCGGAGACTACATCGTCGAATATGGAGCAAACTACCGCGTCTTGTCCCTCGCCACAACCCCGTTCCAGATGTGCTTCTACAACACCAC TCCTGGCCAGTACACTCTGGCCCTCCGGATGGGCACTGTCCGGTCCGAGTCGCTGATGCGATGGGTGTGGGAGGCGAATCGGGGCAATCCCGTGGGAGAA AACGCAACGTTCTCGTTGGGAGCGAACGGGAACCTCGTACTCGCACATTCTGACGGCCGGATGGCGTGGCAATCCAACACGGCTAATAAGGGTGTCACCG GATTCCGAATCCTTAACAATGGGAACATGGTGCTGGTCGATGCGAGAAGCGGGTTCGTGTGGCAGAGCTTCGATTCTCCTACCGATACGTTGCTCGTGGG GCAGTCGCTTCGGATTGGGGGTGTGACGAAACTGACCAGCCGAGCGTCGGTCGAGCTGAACCAAAACGGAGCGTACAGCTTCGTTTTGGAACCGAAGGAC TTGGCGCTTTACTTCACTGGGGCAAATCGAACACCTTACAGGTACTTCTCGTTTGCCGGGGCGCGATCCTTATTCATCCCGAACCAATCCACACTCCAAA ACGTCACCTTCAGTTCTGAACTCGGATTCGAAGGCGTCACAACACTAAAGAACCCTAGATTCAACACCACGCTATCCTACTTCCGCCTCGAAATAGACGG CAACCTCAAGATCCACACATTCATAATCGCCAACGACACCGAAGGGTCCGAATTCCAGCGCTGGGAGACCTCCGTGACCGTCTTCTCCGAGGACGACCCG TGGGCGCTGGACACCAAATGTCAGCTCCCCGGTCGCTGCGGAGATTTCGGTCTCTGCGAGGACAGCATGTGTGTGGCGTGCCCGACCCCCAACGGGTTGA CCGGCTGGAGCAAGGAATGCAAGCCGCCGGCGGTGAGCGTGAGCAGTTGCTCCGGTAGAAAGTTTAAGTACTTTGAGTTGAAGGGGGTTGATCATTTCAT GGCGAAGTATACGAGAGGCGATTCGCCGGTGGCGAAATCAGCGTGCGAGGAGAAGTGCAGTAAGGATTGTAAGTGCTTGGGATATTTTTATCAGAGTGAT TCGTCGAGGTGCTGGATTGCGAATGAGCTGAAGACGATGAGCAGAGTTGCTAATCAGACTCATTTGGCTTACATTAAGACTCCTATTGCTTAA
AA sequence Show only first row Show all	>Lus10000579 pacid=23154167 polypeptide=Lus10000579 locus=Lus10000579.g ID=Lus10000579.BGIv1.0 annot-version=v1.0 MWHQQQSLLCFFFFFFFLATEATVPPSARFSFSNSGEFGDYIVEYGANYRVLSLATTPFQMCFYNTTPGQYTLALRMGTVRSESLMRWVWEANRGNPVGE NATFSLGANGNLVLAHSDGRMAWQSNTANKGVTGFRILNNGNMVLVDARSGFVWQSFDSPTDTLLVGQSLRIGGVTKLTSRASVELNQNGAYSFVLEPKD LALYFTGANRTPYRYFSFAGARSLFIPNQSTLQNVTFSSELGFEGVTTLKNPRFNTTLSYFRLEIDGNLKIHTFIIANDTEGSEFQRWETSVTVFSEDDP WALDTKCQLPGRCGDFGLCEDSMCVACPTPNGLTGWSKECKPPAVSVSSCSGRKFKYFELKGVDHFMAKYTRGDSPVAKSACEEKCSKDCKCLGYFYQSD SSRCWIANELKTMSRVANQTHLAYIKTPIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78850			D-mannose binding lectin prote...		Lus10000579 [exp]	0	1
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10000900 [exp]	1.4	0.9012
AT2G26040		RCAR14, PYL2	regulatory components of ABA r...		Lus10026430 [exp]	2.4	0.8981
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10028345 [exp]	3.0	0.8744
AT1G77660			Histone H3 K4-specific methylt...		Lus10028062 [exp]	4.2	0.8615
AT5G02580			Plant protein 1589 of unknown ...		Lus10025300 [exp]	5.9	0.8702
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10013132 [exp]	7.4	0.8722
AT3G17810		PYD1	pyrimidine 1 (.1)		Lus10041990 [exp]	8.1	0.8709
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Lus10016717 [exp]	8.8	0.8592
AT4G37030			unknown protein		Lus10011021 [exp]	13.9	0.8699
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004558 [exp]	15.9	0.8390

Compare expression of checked genes

Lus10000579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.