Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23790 299 / 1e-100 Protein of unknown function (DUF607) (.1) AT4G36820 290 / 4e-97 Protein of unknown function (DUF607) (.1) AT5G66650 254 / 2e-83 Protein of unknown function (DUF607) (.1) AT5G42610 221 / 7e-71 Protein of unknown function (DUF607) (.1) AT1G09575 164 / 1e-48 Protein of unknown function (DUF607) (.1) AT1G57610 163 / 3e-48 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019663 [exp] 540 / 0 AT2G23790 313 / 4e-106 Protein of unknown function (DUF607) (.1) Lus10022496 [exp] 386 / 2e-134 AT2G23790 371 / 2e-128 Protein of unknown function (DUF607) (.1) Lus10016799 [exp] 378 / 2e-131 AT2G23790 362 / 1e-124 Protein of unknown function (DUF607) (.1) Lus10010793 [exp] 231 / 6e-74 AT5G42610 270 / 2e-89 Protein of unknown function (DUF607) (.1) Lus10016305 [exp] 214 / 2e-67 AT2G23790 264 / 1e-86 Protein of unknown function (DUF607) (.1) Lus10034435 [exp] 169 / 6e-50 AT1G57610 335 / 6e-115 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3) Lus10019127 [exp] 125 / 6e-34 AT1G57610 229 / 2e-75 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3) Lus10005312 [exp] 87 / 9e-22 AT5G66650 70 / 5e-16 Protein of unknown function (DUF607) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G031400 [exp] 305 / 5e-103 AT2G23790 333 / 1e-113 Protein of unknown function (DUF607) (.1) Potri.005G127800 [exp] 295 / 6e-99 AT2G23790 335 / 2e-114 Protein of unknown function (DUF607) (.1) Potri.002G133400 [exp] 244 / 5e-79 AT2G23790 290 / 1e-96 Protein of unknown function (DUF607) (.1) Potri.014G041000 [exp] 234 / 6e-75 AT5G42610 288 / 3e-96 Protein of unknown function (DUF607) (.1) Potri.013G161300 [exp] 157 / 2e-45 AT1G09575 316 / 8e-108 Protein of unknown function (DUF607) (.1) Potri.019G133400 [exp] 157 / 2e-45 AT1G09575 317 / 3e-108 Protein of unknown function (DUF607) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04678 [flax] [poplar] MCU Mitochondrial calcium uniporter
Representative CDS sequence Show only first row Show all	>Lus10000580 pacid=23154163 polypeptide=Lus10000580 locus=Lus10000580.g ID=Lus10000580.BGIv1.0 annot-version=v1.0 ATGGCGTCCAAGAAATCCCTAGCTGATCTTCTCCTCAAGCTCCCCAGATCGTCGACGATCCAATCCTTAACCAGCCGCCGGATCCCTCAGTATCGGAGTA AGGCGAGCATCGCCCCCGATCCTGGAGACAGCTCTGTAATCCGTCGGTTGCTTACGACGGAGAAGCTCCGGGAGTTCGGCGTCGGCAGGGATCGGATCCG ATTAGATGGCCTCCGACCTCCTCCGATCGAGAAACCGGAGCCGGATGTGGACGAGGTGGTAACGGTCGACGACGCGAGGAAGCTGCTCCGGGTGGCACGG CTGGAGACGGTGAAATCGAGGCTGAATGATTCGGCGGGGAGAGACTGGATGCTCCGATCGGAGTTCGTCCGGATCTGCGGGGAAGTGTGTTCGGATCCGG AGGAAGGGAGTCGGATGGCTCGGACGCTTGACGAGTCCGGAACTGTGCTTGTATTGGGAGATGCGGTGTTCCTCAAACCGAAGCAGGTTGTCAAAGTCAT CGGAGGACTAATCCCTTTCCCAGCAACAAACCCAGATGACCCAAGAAAGAAAGAATTCGAACAGCTACAACAGCAGAAATCATTGATCGACGAGAAAGCA AGAGCCCAAGTCCGCCGAGAGCTGTGGGGAGGACTGGCTTACCTAGTCATCCAAACCGCAGGGTTCATGAGGCTAACCTTCTGGGAGCTCTCGTGGGACG TGATGGAGCCCATTTGCTTCTACGTCACCTCAATGTACGTGATGGCCGGGTACGGTTTCTTCCTTAGAACGTCCAGGGAGCCGACGTTTGAAGGGTTCTT CGAGAGCCGGTTCCGGGCTAAGCAGAGGAAGTTGATGAAAACTCGCAACTTCGATCTCAAGAGGTACGACGCGCTTCGAAAGATTTGTCACCCGTTTTCA GAGGACGAGCAAGGACATGGGTTCTTGTCCTCAGGTAGTAAGTAA
AA sequence Show only first row Show all	>Lus10000580 pacid=23154163 polypeptide=Lus10000580 locus=Lus10000580.g ID=Lus10000580.BGIv1.0 annot-version=v1.0 MASKKSLADLLLKLPRSSTIQSLTSRRIPQYRSKASIAPDPGDSSVIRRLLTTEKLREFGVGRDRIRLDGLRPPPIEKPEPDVDEVVTVDDARKLLRVAR LETVKSRLNDSAGRDWMLRSEFVRICGEVCSDPEEGSRMARTLDESGTVLVLGDAVFLKPKQVVKVIGGLIPFPATNPDDPRKKEFEQLQQQKSLIDEKA RAQVRRELWGGLAYLVIQTAGFMRLTFWELSWDVMEPICFYVTSMYVMAGYGFFLRTSREPTFEGFFESRFRAKQRKLMKTRNFDLKRYDALRKICHPFS EDEQGHGFLSSGSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23790			Protein of unknown function (D...		Lus10000580 [exp]	0	1
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Lus10019002 [exp]	1.4	0.9359
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10020248 [exp]	4.9	0.9009
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10007630 [exp]	9.2	0.9407
					Lus10027950 [exp]	12.6	0.8872
AT3G14360			alpha/beta-Hydrolases superfam...		Lus10037465 [exp]	13.1	0.9059
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10016759 [exp]	13.7	0.9237
AT2G27770			Plant protein of unknown funct...		Lus10014372 [exp]	15.7	0.9223
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10004222 [exp]	17.0	0.9284
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10010022 [exp]	17.3	0.8838
AT5G46060			Protein of unknown function, D...		Lus10005266 [exp]	19.1	0.9150

Compare expression of checked genes

Lus10000580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.