Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65120 87 / 4e-22 unknown protein AT5G10110 81 / 7e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022498 [exp] 129 / 1e-37 AT5G10110 164 / 7e-48 unknown protein Lus10016802 [exp] 125 / 2e-36 AT5G65120 160 / 2e-46 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G077400 [exp] 103 / 5e-28 AT5G10110 150 / 2e-42 unknown protein Potri.007G090500 [exp] 103 / 9e-28 AT5G65120 176 / 2e-52 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000581 pacid=23154161 polypeptide=Lus10000581 locus=Lus10000581.g ID=Lus10000581.BGIv1.0 annot-version=v1.0 ATGTGGTCGGACCTTCACTTCCAGGACATCAAGGGTCGATTGTCTTTTTTGAAGAAGAGCAAGAAAGAAGCTAGCATGGTGAACAAACACTTAAGCGGGA GGCCGGCTGAAATCCACAAACAAGGAAACTTCAACATATCATGTCAATGGAGATCTCTGTTTCAGCACATGGAGGACATACTTGTTCATGAAAGCAGCCA GCTTGAAGAGAACTTCCTTGCAGTGAAAGACTTCAGAGAGAGTTGCAAGATGGACATTGTGAGAACTGGGTTACCTTAG
AA sequence Show only first row Show all	>Lus10000581 pacid=23154161 polypeptide=Lus10000581 locus=Lus10000581.g ID=Lus10000581.BGIv1.0 annot-version=v1.0 MWSDLHFQDIKGRLSFLKKSKKEASMVNKHLSGRPAEIHKQGNFNISCQWRSLFQHMEDILVHESSQLEENFLAVKDFRESCKMDIVRTGLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65120			unknown protein		Lus10000581 [exp]	0	1
AT4G01190		ATPIPK10	phosphatidylinositol phosphate...		Lus10003028 [exp]	3.9	0.8741
					Lus10019515 [exp]	4.2	0.8804
AT2G40435			unknown protein		Lus10017415 [exp]	5.7	0.8760
AT4G15620			Uncharacterised protein family...		Lus10041528 [exp]	6.4	0.9004
AT4G37810			unknown protein		Lus10007240 [exp]	8.2	0.8821
AT4G38380			MATE efflux family protein (.1...		Lus10020203 [exp]	10.5	0.8514
AT3G23255			unknown protein		Lus10011825 [exp]	12.6	0.8584
AT1G32583			unknown protein		Lus10001911 [exp]	15.9	0.8407
AT5G01840	OFP	AtOFP1	ARABIDOPSIS THALIANA OVATE FAM...		Lus10042224 [exp]	16.0	0.8350
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014043 [exp]	18.0	0.8435

Compare expression of checked genes

Lus10000581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.