Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73590 159 / 3e-46 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) AT1G23080 104 / 1e-26 PIN7, ATPIN7 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) AT1G70940 102 / 1e-25 PIN3, ATPIN3 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) AT2G01420 99 / 2e-24 PIN4, ATPIN4 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) AT5G57090 87 / 2e-20 MM31, ATPIN2, AGR1, AGR, WAV6, EIR1 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) AT1G77110 58 / 3e-10 PIN6 PIN-FORMED 6, Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009685 [exp] 179 / 2e-55 AT1G73590 568 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10009054 [exp] 179 / 1e-53 AT1G73590 856 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10042004 [exp] 118 / 7e-32 AT1G73590 539 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10020829 [exp] 109 / 1e-28 AT2G01420 506 / 7e-177 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10001429 [exp] 94 / 7e-23 AT5G57090 837 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10001637 [exp] 88 / 2e-20 AT5G57090 838 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10018006 [exp] 62 / 3e-12 AT1G73590 353 / 5e-120 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G047200 [exp] 160 / 1e-46 AT1G73590 870 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.015G038700 [exp] 158 / 5e-46 AT1G73590 858 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.016G035300 [exp] 127 / 9e-35 AT1G73590 743 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.006G037000 [exp] 125 / 9e-34 AT1G73590 756 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.008G129400 [exp] 108 / 1e-27 AT1G70940 961 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.010G112800 [exp] 107 / 2e-27 AT1G70940 952 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.018G139400 [exp] 96 / 2e-23 AT5G57090 950 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.001G205200 [exp] 62 / 2e-11 AT5G57090 523 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.005G187500 [exp] 59 / 1e-10 AT1G77110 707 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1) Potri.002G072200 [exp] 57 / 4e-10 AT1G77110 716 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10000583 pacid=23159119 polypeptide=Lus10000583 locus=Lus10000583.g ID=Lus10000583.BGIv1.0 annot-version=v1.0 ATGTTTCCTGATACCGCTGGTTCGATTGTTTCGATTCATGTCGATTCGGATATCATGTCACTCGACGGACGAATGCCGCTAGAGAAAGAGGCGGACATTA AGAGCGACAGCAAGCTCCATGTCACTATAAGGAGGTCGAACGCTTCCAGATCTGACGTATTCTCATGGAGATCCGGCATCAGAGCGACTCCTCGGCCGAA TCTAACGAACACGGAGATCTATGCATTGAATTTGTCAAGGAATCTGACTCATCGAGGTTCAAGCTTTAACCATAACCATTTCTACTCGATGATGGCCGCC GGTCGGAGCTCCAATTTCGGGCGAACGACGGCTCCACTCCCAGGCTGTCGAACTATGATGAGGATGGTAAAATGGGCCAATTGCAAGATTTTGGGAGAGG GAGGATTTCAAGAGGAGGCAATTGGTCCAGCGGTAAGAGAAGTCGAACCCAAGTCACAAATCAGCGGTGGAGGTTCGAATCCCAAAGGGTATGATTAG
AA sequence Show only first row Show all	>Lus10000583 pacid=23159119 polypeptide=Lus10000583 locus=Lus10000583.g ID=Lus10000583.BGIv1.0 annot-version=v1.0 MFPDTAGSIVSIHVDSDIMSLDGRMPLEKEADIKSDSKLHVTIRRSNASRSDVFSWRSGIRATPRPNLTNTEIYALNLSRNLTHRGSSFNHNHFYSMMAA GRSSNFGRTTAPLPGCRTMMRMVKWANCKILGEGGFQEEAIGPAVREVEPKSQISGGGSNPKGYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10000583 [exp]	0	1
AT4G36470			S-adenosyl-L-methionine-depend...		Lus10041380 [exp]	3.3	0.7213
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10030970 [exp]	10.1	0.7179
AT5G52290		SHOC1	shortage in chiasmata 1 (.1)		Lus10014981 [exp]	21.4	0.6240
AT3G03940			Protein kinase family protein ...		Lus10023628 [exp]	46.7	0.6608
AT3G53240		AtRLP45	receptor like protein 45 (.1)		Lus10043328 [exp]	70.0	0.5878
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10027389 [exp]	74.3	0.6451
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Lus10019340 [exp]	133.4	0.5949
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Lus10010448 [exp]	175.7	0.5791
AT1G77460			Armadillo/beta-catenin-like re...		Lus10029691 [exp]	190.0	0.5653
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10036713 [exp]	195.1	0.5750

Compare expression of checked genes

Lus10000583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.