Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G06634 256 / 1e-82 C2H2ZnF zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3) AT5G04240 46 / 3e-05 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) AT1G72050 44 / 0.0001 C2H2ZnF TFIIIA transcription factor IIIA (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011009 [exp] 434 / 1e-152 AT4G06634 378 / 7e-130 zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3) Lus10043332 [exp] 42 / 0.0007 AT3G48430 877 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Lus10015657 [exp] 42 / 0.0007 AT1G72050 394 / 9e-136 transcription factor IIIA (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G221700 [exp] 289 / 1e-95 AT4G06634 432 / 4e-151 zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3) Potri.003G010400 [exp] 288 / 2e-95 AT4G06634 408 / 7e-142 zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3) Potri.013G108600 [exp] 52 / 3e-07 AT1G72050 410 / 3e-142 transcription factor IIIA (.1.2) Potri.019G081100 [exp] 49 / 3e-06 AT1G72050 413 / 2e-143 transcription factor IIIA (.1.2) Potri.010G224700 [exp] 45 / 6e-05 AT5G04240 956 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Potri.008G037800 [exp] 44 / 0.0002 AT5G04240 997 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF00096 [flax] [poplar] zf-C2H2 Zinc finger, C2H2 type
Representative CDS sequence Show only first row Show all	>Lus10000585 pacid=23143618 polypeptide=Lus10000585 locus=Lus10000585.g ID=Lus10000585.BGIv1.0 annot-version=v1.0 ATGGAGACGCACTACAGTCACAACCCGTTCGACAGACGCCCGATTTTCGCTTCCAAGGCTCCCGCAGTTAAATGGTTCAAGGAATGGGTGCCTCAGGATG TCGTAGCTACCGGTGGAAAGTGTTCGATTTTAAAATGGGTAACAGAGAGCCAATTGAAAGCCTTAAAAGAGAAGGCCAAAGAGCCGCCAGCACCGGAGCC GGAACCAGAACCGACTACCGAAGTTCTGTTCCTTTGCAGTTTTGATGGATGTGGGAAAACCTTCATAGACGCTGGCGCTTTGAGAAAGCATTCTCATATC CATGGCGAACGCCAGTATGTTTGTCCCTATGAAGGATGCGGCAAGGCCTTCTCGTTAGATTTCAACCTCCGGTCGCATATGAAGACACATTCGCAAGAGA ACTACCATATCTGTCCGTTCACGGAATGCGGGAAGAGATACGCTCACGACTACAAACTACGGAACCACATTCAGTCTCAGCACGAGAAATCCGGGTTTGC TTCTAATCAGAGTCCAACTCCGGAGACAGTGAGGTATGCAACCCCGCCGGAGAAAGCACCAAAAGCACCAAAGCCTCCACCACCATCAGCATCATCATCA AGGCCACCAGCAGCACCTACACCACCCTCACTAGACCGGCCTTACGCTTGCCCTTACTACGCTTGCCGGAAAGCGTACATCCACGAGTACAAGCTCAAGC TCCACCTGAGGGACCACCCGGACCACAACATCGACGAGAATCATCATCATCGCCACAATAACGCTGAGAATGGCATGGACGACGAAAACGCCAATGGCGG AGGCAGCAGGAGGAGCAGGGCGAAGCCTACCTTGAAGACTCCTCCTACGACAAAGGTGGCGAAACGTAAAGCTGGTTCGAGTCCTTCTCCGAATGTGGTG GCGAAGAAGAAGGCGGTGGTGTGGCCACCTGGAGTTAATGAGGAAGAGGATAGTGAAGAGACTGAGGAGGATAGAGAGAGCGGTGGTGAGGATGGTTGGA GATATCGGGAAGGGAATGAGGAGGAAGATGATGAAGAGACTGAGTATGAAGACTGA
AA sequence Show only first row Show all	>Lus10000585 pacid=23143618 polypeptide=Lus10000585 locus=Lus10000585.g ID=Lus10000585.BGIv1.0 annot-version=v1.0 METHYSHNPFDRRPIFASKAPAVKWFKEWVPQDVVATGGKCSILKWVTESQLKALKEKAKEPPAPEPEPEPTTEVLFLCSFDGCGKTFIDAGALRKHSHI HGERQYVCPYEGCGKAFSLDFNLRSHMKTHSQENYHICPFTECGKRYAHDYKLRNHIQSQHEKSGFASNQSPTPETVRYATPPEKAPKAPKPPPPSASSS RPPAAPTPPSLDRPYACPYYACRKAYIHEYKLKLHLRDHPDHNIDENHHHRHNNAENGMDDENANGGGSRRSRAKPTLKTPPTTKVAKRKAGSSPSPNVV AKKKAVVWPPGVNEEEDSEETEEDRESGGEDGWRYREGNEEEDDEETEYED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G06634	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10000585 [exp]	0	1
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Lus10000496 [exp]	11.6	0.8833
AT1G03910			unknown protein		Lus10027605 [exp]	12.4	0.8407
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Lus10014659 [exp]	19.2	0.8727
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Lus10040239 [exp]	22.3	0.8601
AT1G68140			Protein of unknown function (D...		Lus10004940 [exp]	24.0	0.8537
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10015203 [exp]	30.7	0.8573
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10007273 [exp]	30.9	0.8489
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10011143 [exp]	31.5	0.8641
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10035409 [exp]	32.9	0.8592
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10002378 [exp]	40.4	0.8212

Compare expression of checked genes

Lus10000585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.