Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17570 361 / 6e-119 GATA GATA26 GATA transcription factor 26 (.1.2.3) AT5G47140 296 / 1e-94 GATA GATA27 GATA transcription factor 27 (.1) AT3G45170 48 / 4e-06 GATA GATA14 GATA transcription factor 14 (.1) AT3G06740 42 / 0.0003 GATA GATA15 GATA transcription factor 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011008 [exp] 839 / 0 AT4G17570 470 / 5e-162 GATA transcription factor 26 (.1.2.3) Lus10011010 [exp] 502 / 2e-172 AT4G17570 294 / 3e-92 GATA transcription factor 26 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G082800 [exp] 555 / 0 AT4G17570 479 / 4e-165 GATA transcription factor 26 (.1.2.3) Potri.001G151700 [exp] 551 / 0 AT4G17570 485 / 1e-167 GATA transcription factor 26 (.1.2.3) Potri.007G116550 [exp] 44 / 0.0002 AT3G21175 228 / 3e-73 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.019G033000 [exp] 44 / 0.0002 AT4G32890 127 / 2e-34 GATA transcription factor 9 (.1) Potri.013G059600 [exp] 44 / 0.0002 AT5G25830 128 / 1e-34 GATA transcription factor 12 (.1) Potri.002G110900 [exp] 42 / 0.001 AT4G24470 253 / 2e-83 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00320 [flax] [poplar] GATA GATA zinc finger CL0266 [flax] [poplar] PH PF04683 [flax] [poplar] Proteasom_Rpn13 Proteasome complex subunit Rpn13 ubiquitin receptor
Representative CDS sequence Show only first row Show all	>Lus10000587 pacid=23143617 polypeptide=Lus10000587 locus=Lus10000587.g ID=Lus10000587.BGIv1.0 annot-version=v1.0 ATGGGAAAGCAAGGACCTTGCTATCACTGTGGAGTTACAATTTTGTTGCGAAAGTTCGAGAGGAATGTTGAATCCGTTTCGAGCATTGCTTTCCTCTCAG TTTTTAGCATTGAGTTCTTGGCTGGTTTCAGTAAAGCTTGTGTCTTTGCAATGCCCATTTCGAACATTGCTTTCCTCTCAGTTGTTGCATTGAGTTGTTG CATTACTTTAGCTCAAGGCACGCCACTCTGGAGAAACGGACCCCCCGAGAAGCCGGTTCTGTGCAATGCGTGTGGGTCTAGGTGGCGCACGAAGGGAACG CTAGTGAACTACACACCTCTTCATTCTCGGCCAGACCCTGTCGATTACGGTCGCGTGAAGAGGAAGGCTATCGTCGAGGCTGATGTGGCTGTCGGAGGGT TTGTAACAGTTCCGGATTACGTCCAGAATAGCCGAAAGGCTTTCGATGAAGATGTTAGTAATAGGTCGAGTTCCGGATCAGCCATTTCCAATTCCGAGAG CTGTGCACAGTTCGGCAGCATCGATGCTAGTGAATTGACAGGCTCTGGTCAAACAGTGGTCTGGGACTCGACGGTGCCATCTCGAAAGAGAACCTGTGTC AACCGTCCAAAACAGTCCTCAGTGGAGAAGCTGACGAAGGATCTCTACACGATATGGCACGAGCAGCAGTCTTCTTGCTTCTCCGGCCTTTCTGAAGAGG ATGATTTGCTTTTCGAGAGCGAAACGCCAATGGTCTCCGTCGAGATAGGGCATGGAAGTGTCCTCATCAAGCATCCGAGTGCAATAGCTCGTGATGAGGA GTCGGAGGCCAGTTCCCTTTCTGTTCACAACAAGTATAGCCATTCGGCTAATGAAGCTTACTCCCGCTCGGTCATCATCAAGACTCCTGGTTCTGCTATC GCAAAAGCTCAGAACCGTCCTGGACCAAATCTCAACCGGGACAAGTCTCAACACGACAAGGTGCAGGTTCTTGGCAGTCATAAGTCACCTCTGTGTAACA TTGATCTGAATTGTGTCATCAATTTTGAGGAGTTTGCGAAACAGTTGACGAACGAAGAGCAGCAGCAGTTGCTGAAATATCTGCCTTCAGTCGACTCCGG CAGAGTTCCTGAAAGCATCAGAGCCATGTTTGATAGTCCTCAGTACAAGGAGAACTTGTCTTCCTATCAACAGCTAATGGCAGAAGGAGTCTTTGATCTA TCATTTCCTGGAGCCAAGTCTGAAGATTGCAAGACTCTAAAGAGGCTTACGTTATCGAACTTCTCGAAGTCTAAATGGGTCGAGCACTATAATCTACTCA AGAAATGCAGAAGCAATGGAGGGAAGTCTCCTGCTGTGAAGGGAAACCATGTGGCTTCGAATTTCTCGAGCTCGAGTCAGAGGATTCCAGAAATGAAGAT GATTAGAAGCCCTAAGAGGAGCATTACGTACGGGAACAACGAGCTCACAGAAAACGAGGCATCCTACTTCAGTCCGAAGAGCCTGTTCGCATTGCCTCCC GAGGGAGGCTTCGAGGACTCTCTCAATTTCATCGACGACGAAGGAGACTTACTGCTGGATGTGCCATCCAATGGCTCATTCCCTCAGGCAGAACTGCTGC ATCTGAGGAATCTTGGGCTGCAAGCAAGCACTAGCAGTAGCTCAATTCGCCCACTCCGTCCCTGA
AA sequence Show only first row Show all	>Lus10000587 pacid=23143617 polypeptide=Lus10000587 locus=Lus10000587.g ID=Lus10000587.BGIv1.0 annot-version=v1.0 MGKQGPCYHCGVTILLRKFERNVESVSSIAFLSVFSIEFLAGFSKACVFAMPISNIAFLSVVALSCCITLAQGTPLWRNGPPEKPVLCNACGSRWRTKGT LVNYTPLHSRPDPVDYGRVKRKAIVEADVAVGGFVTVPDYVQNSRKAFDEDVSNRSSSGSAISNSESCAQFGSIDASELTGSGQTVVWDSTVPSRKRTCV NRPKQSSVEKLTKDLYTIWHEQQSSCFSGLSEEDDLLFESETPMVSVEIGHGSVLIKHPSAIARDEESEASSLSVHNKYSHSANEAYSRSVIIKTPGSAI AKAQNRPGPNLNRDKSQHDKVQVLGSHKSPLCNIDLNCVINFEEFAKQLTNEEQQQLLKYLPSVDSGRVPESIRAMFDSPQYKENLSSYQQLMAEGVFDL SFPGAKSEDCKTLKRLTLSNFSKSKWVEHYNLLKKCRSNGGKSPAVKGNHVASNFSSSSQRIPEMKMIRSPKRSITYGNNELTENEASYFSPKSLFALPP EGGFEDSLNFIDDEGDLLLDVPSNGSFPQAELLHLRNLGLQASTSSSSIRPLRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10000587 [exp]	0	1
AT1G05940		CAT9	cationic amino acid transporte...		Lus10042898 [exp]	2.0	0.8847
AT4G16144		AMSH3	associated molecule with the S...		Lus10036454 [exp]	5.2	0.8855
AT3G43230			RING/FYVE/PHD-type zinc finger...		Lus10027659 [exp]	6.2	0.8921
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10028560 [exp]	8.9	0.8670
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013374 [exp]	9.2	0.8824
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10018963 [exp]	13.7	0.8785
AT4G19670			RING/U-box superfamily protein...		Lus10038341 [exp]	14.1	0.8485
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10035835 [exp]	15.0	0.8865
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040284 [exp]	21.3	0.8245
AT1G12855			F-box family protein (.1)		Lus10042738 [exp]	24.9	0.8399

Compare expression of checked genes

Lus10000587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.