Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011007 [exp] 107 / 4e-29 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000588 pacid=23143623 polypeptide=Lus10000588 locus=Lus10000588.g ID=Lus10000588.BGIv1.0 annot-version=v1.0 ATGGACGCCGTTTCACAAGCAACTGAAGCTTCTGACCCGGCCACGTTGACAGGGAACAATAATCTGATGGCTTTGCAACAGCAGATGGACCAGTCGTTTC TGAACCGCGGGCAGCATCTCGAGGAGCTCGCCAAGGAGATCGAGGCGAAGGCGAAAGCTGCAGCAGAGAAAGTGGCTGCCAATGCTGCCGAGCTGAGGAA GGTCAGGGGAGTCCCCGACGATCCTGTCCGGCCACTGGCTTGCTTCGAGAGGAAGTCGGCACTTTCGGAGCAGCCTGTCGATCCCAGTTCTCGTGATCGT AGCAGAAACCAAGACAGGAGTCCATCCATTACAAGAGATGACCATCCAAGGAACAGAACCAGAAGACCGCAACACAGGAACCGGAGCAGGAACTCGACAA GGACTGCTAAAACAAATGCAGAAGAGCCGATAGACAGCCATCAGAGTTCTCGTCAGCGTGGGAGAAGTCGAGAAAGGAGTCCAGCATTGCACGTCGAAAG CAAAGCGGATGATCATTCGAGGGATAGAGCCGTAAGGTGA
AA sequence Show only first row Show all	>Lus10000588 pacid=23143623 polypeptide=Lus10000588 locus=Lus10000588.g ID=Lus10000588.BGIv1.0 annot-version=v1.0 MDAVSQATEASDPATLTGNNNLMALQQQMDQSFLNRGQHLEELAKEIEAKAKAAAEKVAANAAELRKVRGVPDDPVRPLACFERKSALSEQPVDPSSRDR SRNQDRSPSITRDDHPRNRTRRPQHRNRSRNSTRTAKTNAEEPIDSHQSSRQRGRSRERSPALHVESKADDHSRDRAVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000588 [exp]	0	1
AT4G01040			Glycosyl hydrolase superfamily...		Lus10005946 [exp]	12.4	0.7193
AT3G54490		RPB5E	"RNA polymerase II fifth large...		Lus10024169 [exp]	14.5	0.7696
AT5G58490			NAD(P)-binding Rossmann-fold s...		Lus10026385 [exp]	15.3	0.7095
					Lus10003273 [exp]	18.8	0.7515
AT5G59240			Ribosomal protein S8e family p...		Lus10016587 [exp]	30.1	0.7100
AT4G18100			Ribosomal protein L32e (.1)		Lus10012195 [exp]	41.6	0.6965
AT1G20770			unknown protein		Lus10030736 [exp]	43.9	0.6957
AT2G06010		ORG4	OBP3-responsive gene 4 (.1)		Lus10020742 [exp]	44.0	0.6504
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10020992 [exp]	48.7	0.6572
AT3G55000		TON1A	TONNEAU 1A, TONNEAU 1, tonneau...		Lus10001983 [exp]	50.9	0.7035

Compare expression of checked genes

Lus10000588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.