Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23620 328 / 3e-114 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1.2) AT5G66860 151 / 1e-44 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011005 [exp] 496 / 3e-180 AT4G23620 328 / 4e-114 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1.2) Lus10009338 [exp] 142 / 4e-41 AT5G66860 297 / 4e-102 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1) Lus10019634 [exp] 136 / 5e-39 AT5G66860 293 / 8e-101 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G097801 [exp] 337 / 8e-118 AT4G23620 320 / 4e-111 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1.2) Potri.005G135000 [exp] 147 / 6e-43 AT5G66860 320 / 5e-111 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1) Potri.007G039700 [exp] 139 / 8e-40 AT5G66860 315 / 4e-109 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000590 pacid=23143619 polypeptide=Lus10000590 locus=Lus10000590.g ID=Lus10000590.BGIv1.0 annot-version=v1.0 ATGTACAGACTCTATAGAACTTTAGCATCCACCACCACCGCCGGTGGAACCAAAACCATCCACCGCTTCTTTGCCCAGCTCGCCGTCGCCGAGGAGTCAG TATCACCAGCCATCAACGAATCGACGCCGTTAACATACCTCGACGGGTTCCCGAAGCCGGCGGCGGCGGAGACGATTCTGGCGATCCCGCGAGCAGCTTC CGGGAAGAGCATCTCGGCTAAGGAGAGGAAAGCTGGGAGGGTGCCCGGGCTCTTATTCGAGCAGGAGAATGGGCAGCAAGGCGGGAACAAACGGCTGGTT TCTGTCCAGGCGAATCGGATAAGGAATATGGTGGATAAGATCGGGAGGTCGTTCTTCTTGTCTAGGCTGTTTGATCTCGAGGTCAGGTCCGCGTTTGATG AGTCCGGCGAGATCGTCGAGAAAGGTCGGGTCTTGCCCAGATTGCTGCATTTGCACTCAGGGACTGATGCGCCGCTTAATATTACGTTCATAAGGGCGCC ATCGGAGGCATTGTTGAAGGTTGATGTTCCTCTTGTGTTCATAGGAGATGATGTTTCTCCTGGTCTAAGGAAAGGTTCCTACTTGAACGTGATCAAGAGA ACAGTGAAATTCCTGTGCCCAGCAGACATAATCCCACCCTACATCGAAGTCGACCTAAGCGAACTGGATGTCGGCGAGAAGCTCCTAGTCGGCGACCTCA TCGTCCACCCGGCATTGAAGCCGGTGGTGGCGAAAGAACAGCCGGTTGTGAAGATCCAGGGAGCCCGAGTTTCCGACCAAAAGAAAGCCAAATAA
AA sequence Show only first row Show all	>Lus10000590 pacid=23143619 polypeptide=Lus10000590 locus=Lus10000590.g ID=Lus10000590.BGIv1.0 annot-version=v1.0 MYRLYRTLASTTTAGGTKTIHRFFAQLAVAEESVSPAINESTPLTYLDGFPKPAAAETILAIPRAASGKSISAKERKAGRVPGLLFEQENGQQGGNKRLV SVQANRIRNMVDKIGRSFFLSRLFDLEVRSAFDESGEIVEKGRVLPRLLHLHSGTDAPLNITFIRAPSEALLKVDVPLVFIGDDVSPGLRKGSYLNVIKR TVKFLCPADIIPPYIEVDLSELDVGEKLLVGDLIVHPALKPVVAKEQPVVKIQGARVSDQKKAK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23620			Ribosomal protein L25/Gln-tRNA...		Lus10000590 [exp]	0	1
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10007579 [exp]	3.2	0.9162
AT3G06040			Ribosomal protein L12/ ATP-dep...		Lus10031756 [exp]	3.2	0.9074
AT3G44590			60S acidic ribosomal protein f...		Lus10020575 [exp]	6.7	0.9223
AT5G11780			unknown protein		Lus10040547 [exp]	7.3	0.8907
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007619 [exp]	7.3	0.9243
AT3G09630			Ribosomal protein L4/L1 family...		Lus10026476 [exp]	9.1	0.9335
AT4G35490		MRPL11	mitochondrial ribosomal protei...		Lus10031045 [exp]	14.3	0.9154
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10019701 [exp]	17.5	0.8788
AT1G30580			GTP binding (.1)		Lus10038543 [exp]	17.7	0.8911
AT3G57490			Ribosomal protein S5 family pr...		Lus10027358 [exp]	22.3	0.9194

Compare expression of checked genes

Lus10000590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.