Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47180 277 / 5e-95 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) AT4G00170 152 / 8e-46 Plant VAMP (vesicle-associated membrane protein) family protein (.1) AT3G60600 140 / 6e-41 (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, VAP27-1, VAP27, (AT)VAP, (AT)VAP, (A VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) AT2G45140 139 / 9e-41 PVA12 plant VAP homolog 12 (.1) AT1G08820 120 / 7e-32 VAP27-2 vamp/synaptobrevin-associated protein 27-2 (.1.2) AT1G51270 114 / 3e-29 structural molecules;transmembrane receptors;structural molecules (.1.2.3.4) AT2G23830 107 / 4e-29 PapD-like superfamily protein (.1) AT4G21450 53 / 3e-08 PapD-like superfamily protein (.1.2.3) AT5G54110 49 / 9e-07 ATMAMI membrane-associated mannitol-induced (.1) AT4G05060 48 / 1e-06 PapD-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011004 [exp] 298 / 2e-103 AT5G47180 167 / 2e-52 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Lus10010360 [exp] 169 / 2e-52 AT4G00170 311 / 5e-108 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10036495 [exp] 163 / 7e-50 AT4G00170 316 / 4e-110 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10008512 [exp] 139 / 2e-40 AT2G45140 296 / 7e-102 plant VAP homolog 12 (.1) Lus10007463 [exp] 138 / 9e-40 AT3G60600 306 / 4e-105 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10009279 [exp] 145 / 1e-39 AT4G00060 1034 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Lus10015885 [exp] 136 / 2e-39 AT2G45140 307 / 2e-106 plant VAP homolog 12 (.1) Lus10028937 [exp] 140 / 1e-38 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10033837 [exp] 121 / 1e-31 AT1G08820 256 / 2e-80 vamp/synaptobrevin-associated protein 27-2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G082500 [exp] 262 / 4e-89 AT5G47180 281 / 1e-96 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.001G152100 [exp] 237 / 4e-79 AT5G47180 229 / 4e-76 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.002G144800 [exp] 173 / 9e-54 AT4G00170 313 / 5e-109 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Potri.002G144000 [exp] 164 / 3e-50 AT3G60600 298 / 1e-102 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Potri.014G060900 [exp] 163 / 8e-50 AT2G45140 328 / 9e-115 plant VAP homolog 12 (.1) Potri.003G076100 [exp] 152 / 2e-45 AT2G45140 262 / 1e-88 plant VAP homolog 12 (.1) Potri.001G152000 [exp] 149 / 3e-44 AT2G45140 296 / 6e-102 plant VAP homolog 12 (.1) Potri.005G044900 [exp] 132 / 1e-36 AT1G08820 261 / 4e-84 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.013G031400 [exp] 124 / 1e-33 AT1G08820 273 / 5e-89 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.010G031601 [exp] 92 / 8e-22 AT2G45140 112 / 4e-29 plant VAP homolog 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [flax] [poplar] PapD-like PF00635 [flax] [poplar] Motile_Sperm MSP (Major sperm protein) domain
Representative CDS sequence Show only first row Show all	>Lus10000591 pacid=23143630 polypeptide=Lus10000591 locus=Lus10000591.g ID=Lus10000591.BGIv1.0 annot-version=v1.0 ATGTCCACGGTCGGCGGCGGCGGCGACAGCAACAACCTGATCACCGTACATCCTGACGAGCTCAGGTTTATTTTTGAAGTGGACAAACAGAGTTTCTGCG ACCTTAAAGTCGTGAACAACACCGAACGACATGTTGCTTTCAAGGTTAAAACCACTTCACCTAAGAAGTACTTTGTAAGGCCCAACACTGGTGTAATTCA ACCTTGGGATTCTTGTGTTATCCGAGTTACTTTGCAAGCACAAAGAGAAAGTCCACCTGATATGCAATGCAAAGACAAATTCTTGTTGCTAAGCACAACT GTGCCTCAGCATACTGATGTGGATGAGCTTCCTCTAGACACATTCACTAAGGATAGCAATGGAAGAATTGTGGGGGAGTGCAAGCTAAGAGTTCTATATA TCCCACCCTCAGCTCAAGAGAATGGAGAAGATGATGCCTTGGCAAGCCCTAATCAAAGTTTCGATGGCAATTTTCGTTTGAAGGATGAAAGAGATTCGGC TATGCGACAGACACAACAACTGCAGCAAGAACTAGATTTAATAAAACGTCGAGACTATCGGAAAACTAGTTCAGGATTCTCTATCAAGTTTGCATTGATC GTGGCACTCATCTGCTTTATGCTCGGCATCTTGATGAAATGGTCAATGTCTTCGCCGACGGCGGATCTAACAGAAGTTTTAACCCCGCCGGAAGTTTTAA CCCCATCGGAAATATAA
AA sequence Show only first row Show all	>Lus10000591 pacid=23143630 polypeptide=Lus10000591 locus=Lus10000591.g ID=Lus10000591.BGIv1.0 annot-version=v1.0 MSTVGGGGDSNNLITVHPDELRFIFEVDKQSFCDLKVVNNTERHVAFKVKTTSPKKYFVRPNTGVIQPWDSCVIRVTLQAQRESPPDMQCKDKFLLLSTT VPQHTDVDELPLDTFTKDSNGRIVGECKLRVLYIPPSAQENGEDDALASPNQSFDGNFRLKDERDSAMRQTQQLQQELDLIKRRDYRKTSSGFSIKFALI VALICFMLGILMKWSMSSPTADLTEVLTPPEVLTPSEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47180			Plant VAMP (vesicle-associated...		Lus10000591 [exp]	0	1
AT5G13240			transcription regulators (.1)		Lus10034638 [exp]	10.8	0.8741
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10007246 [exp]	13.0	0.8559
AT4G27390			unknown protein		Lus10037884 [exp]	18.7	0.8529
					Lus10022145 [exp]	21.4	0.8516
AT1G26420			FAD-binding Berberine family p...		Lus10023368 [exp]	24.0	0.8516
					Lus10024550 [exp]	26.3	0.8516
AT5G22750		RAD5A, RAD5	DNA/RNA helicase protein (.1)		Lus10019523 [exp]	27.6	0.7809
AT2G20420			ATP citrate lyase (ACL) family...		Lus10024923 [exp]	28.4	0.8516
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	30.3	0.8516
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10010756 [exp]	32.2	0.8516

Compare expression of checked genes

Lus10000591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.