Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02890 211 / 2e-65 HXXXD-type acyl-transferase family protein (.1) AT4G29250 74 / 4e-14 HXXXD-type acyl-transferase family protein (.1) AT3G23840 64 / 6e-11 HXXXD-type acyl-transferase family protein (.1) AT4G24510 57 / 7e-09 VC2, VC-2, CER2 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) AT4G13840 52 / 4e-07 HXXXD-type acyl-transferase family protein (.1) AT4G31910 48 / 6e-06 HXXXD-type acyl-transferase family protein (.1) AT5G47950 48 / 6e-06 HXXXD-type acyl-transferase family protein (.1) AT1G27620 48 / 6e-06 HXXXD-type acyl-transferase family protein (.1) AT5G23970 48 / 7e-06 HXXXD-type acyl-transferase family protein (.1) AT3G30280 45 / 6e-05 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011003 [exp] 647 / 0 AT5G02890 213 / 5e-66 HXXXD-type acyl-transferase family protein (.1) Lus10040156 [exp] 340 / 7e-115 AT5G02890 213 / 6e-66 HXXXD-type acyl-transferase family protein (.1) Lus10004360 [exp] 334 / 7e-113 AT5G02890 220 / 1e-68 HXXXD-type acyl-transferase family protein (.1) Lus10028335 [exp] 68 / 3e-12 AT4G29250 365 / 1e-122 HXXXD-type acyl-transferase family protein (.1) Lus10041782 [exp] 60 / 1e-09 AT4G29250 348 / 8e-116 HXXXD-type acyl-transferase family protein (.1) Lus10016638 [exp] 57 / 1e-08 AT4G13840 315 / 2e-103 HXXXD-type acyl-transferase family protein (.1) Lus10014695 [exp] 54 / 9e-08 AT3G26040 221 / 2e-66 HXXXD-type acyl-transferase family protein (.1) Lus10040354 [exp] 50 / 1e-06 AT3G26040 224 / 1e-67 HXXXD-type acyl-transferase family protein (.1) Lus10028171 [exp] 50 / 2e-06 AT4G24510 289 / 8e-94 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G082100 [exp] 247 / 3e-79 AT5G02890 191 / 1e-57 HXXXD-type acyl-transferase family protein (.1) Potri.001G152500 [exp] 239 / 8e-76 AT5G02890 211 / 4e-65 HXXXD-type acyl-transferase family protein (.1) Potri.018G032700 [exp] 70 / 6e-13 AT4G29250 437 / 5e-151 HXXXD-type acyl-transferase family protein (.1) Potri.005G153600 [exp] 68 / 2e-12 AT4G24510 313 / 4e-103 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) Potri.001G319200 [exp] 62 / 1e-10 AT4G13840 356 / 6e-120 HXXXD-type acyl-transferase family protein (.1) Potri.006G036100 [exp] 53 / 1e-07 AT3G26040 250 / 2e-78 HXXXD-type acyl-transferase family protein (.1) Potri.005G230900 [exp] 49 / 4e-06 AT1G27620 607 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.001G326300 [exp] 48 / 6e-06 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.005G028000 [exp] 48 / 6e-06 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.017G029300 [exp] 48 / 6e-06 AT1G24430 252 / 3e-79 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10000592 pacid=23143627 polypeptide=Lus10000592 locus=Lus10000592.g ID=Lus10000592.BGIv1.0 annot-version=v1.0 ATGACGAAAACAACCCCCATCCCAAAGCCACAGCTAGAAGGGATCCAAACGGTTCCCCCATCGACGGTCACCGAGCCAAGGAGGACGCGCCACGTGTCCC TAGACGACGGGGTAGAACTCTTGAAAGGGTGTCTGAACGTCGTCTTGTTCTACAACAAAGCGGTGGGGCAAGGGGATCAGGGTTCTGGCTGGCTGGTGGC TGGCTGGATGAAGGACTCGTTGGCGCGGGCCATGAATGAGCAACCTTTGCTGAGTGGAAGGGTTGTGTGTAGCAAAGGAGATGCGTTGCAGATCGTGTCG AACGATAGTGGTGCCCGACTGATCGAGGCCACGATCCCGGTGAGTGTGAAGGAGTTCATGGAGATGGAGGATGGGGTTAGGGGTGAGGCTGAGGCTGAGT TGGTTTTTTGGAAGGAAGTTGATGAGATGAGTCCTCAGTTTTCTCCTCTCCTCTATGTTCAGGTTACAAATTTCAGCTGCGGAGGCTACTCGGTTGGAAT TAGTTGTAGCCTCCTCCTAGCAGACATTCTGCTAACCAACAACTTTTTCCAAAAATGGGGCAAGATCCAGCGACAACGAATCATTTCCAACTCATCCTCG GCCAACATCCCGACATTCTACCTCCCAAACCTCAAACCTAACGGTTCGTTTACCCTAGAAGCGTTCGATTCAACTCCAACCAGAGGCAAGTCACACTCCA TGTTCTTCAAAACCAAACAACAACACGATCATCACGAAACATCGTTCCATTTGGCCAACGTATGCGCAAAAAAAGCACGACACATTCTAGGTAACGGTGC AACCGTGGTTTCGAGCTTTCGTTTGGTTTCGTTGTCGAAGGAGGATGAGGTTTTGAGGGTGAAGAAGTGGGAGACAAGTGAAGAAGGGAAGGGTAAAGGG AAAGAAACTGTGGTGGGGAATGCTAGTTGGGAGGATTTGGGGATTGGTGAGGTTTCCTTCTACCAAGGGAACAAGCCTATTGGTTTGGCTTGTTGGGTTG GGTGGGAAGACGACGAAACTGGATTGGTTATGACTATTGACGATAGTAAGAAAAACGACGGTGTCATCGTCGTTGTTGCCATCCCCGGCGGTGAGAAGAT TCGACGTTTATAG
AA sequence Show only first row Show all	>Lus10000592 pacid=23143627 polypeptide=Lus10000592 locus=Lus10000592.g ID=Lus10000592.BGIv1.0 annot-version=v1.0 MTKTTPIPKPQLEGIQTVPPSTVTEPRRTRHVSLDDGVELLKGCLNVVLFYNKAVGQGDQGSGWLVAGWMKDSLARAMNEQPLLSGRVVCSKGDALQIVS NDSGARLIEATIPVSVKEFMEMEDGVRGEAEAELVFWKEVDEMSPQFSPLLYVQVTNFSCGGYSVGISCSLLLADILLTNNFFQKWGKIQRQRIISNSSS ANIPTFYLPNLKPNGSFTLEAFDSTPTRGKSHSMFFKTKQQHDHHETSFHLANVCAKKARHILGNGATVVSSFRLVSLSKEDEVLRVKKWETSEEGKGKG KETVVGNASWEDLGIGEVSFYQGNKPIGLACWVGWEDDETGLVMTIDDSKKNDGVIVVVAIPGGEKIRRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10000592 [exp]	0	1
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10003471 [exp]	1.0	0.9698
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10015734 [exp]	4.0	0.9639
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036819 [exp]	6.0	0.9638
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10000208 [exp]	6.3	0.9581
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10030709 [exp]	6.3	0.9604
					Lus10002317 [exp]	7.7	0.9568
AT3G21690			MATE efflux family protein (.1...		Lus10027168 [exp]	11.8	0.9252
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027772 [exp]	11.8	0.9507
					Lus10038295 [exp]	12.0	0.9460
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10040287 [exp]	12.6	0.9366

Compare expression of checked genes

Lus10000592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.