Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35660 606 / 0 CTF2B, CTF2A FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) AT2G29720 514 / 0 CTF2B FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G05320 221 / 1e-67 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G38540 210 / 2e-63 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G15760 168 / 2e-47 MO1 monooxygenase 1 (.1.2) AT5G67030 91 / 2e-19 NPQ2, LOS6, IBS3, ATZEP, ATABA1, ABA1 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) AT5G11330 50 / 1e-06 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034475 [exp] 243 / 4e-76 AT5G05320 407 / 2e-140 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10019729 [exp] 237 / 6e-74 AT4G38540 400 / 4e-138 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034467 [exp] 232 / 7e-72 AT4G38540 418 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10025068 [exp] 224 / 6e-69 AT5G05320 410 / 1e-141 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10033385 [exp] 219 / 2e-66 AT5G05320 284 / 3e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034838 [exp] 209 / 5e-63 AT5G05320 285 / 1e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10016398 [exp] 207 / 4e-61 AT4G38540 358 / 1e-119 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034817 [exp] 199 / 3e-59 AT4G38540 290 / 8e-95 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10033366 [exp] 199 / 3e-59 AT4G38540 284 / 1e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G152600 [exp] 620 / 0 AT2G35660 658 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) Potri.004G176950 [exp] 231 / 2e-71 AT4G38540 413 / 4e-143 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G176750 [exp] 229 / 1e-70 AT4G38540 419 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003400 [exp] 204 / 4e-61 AT4G38540 283 / 4e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003600 [exp] 199 / 1e-58 AT4G38540 277 / 3e-89 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003700 [exp] 188 / 4e-55 AT4G38540 256 / 9e-82 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.001G307500 [exp] 187 / 1e-54 AT4G38540 295 / 1e-96 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003500 [exp] 186 / 4e-54 AT5G05320 273 / 4e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003800 [exp] 184 / 9e-54 AT5G05320 273 / 3e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003300 [exp] 181 / 2e-52 AT5G05320 272 / 1e-87 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01494 [flax] [poplar] FAD_binding_3 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10000593 pacid=23143616 polypeptide=Lus10000593 locus=Lus10000593.g ID=Lus10000593.BGIv1.0 annot-version=v1.0 ATGGCTGCCACCGTAGCTACTCCGTTCTCTTCTCCCATCTACCGTCGACCTCCAAGAAACAGAGTCGCCATCGCCAGAGCGACGAAATCCGGCGAGGATG ATTTCCGTCCTCGTCCTGAGGATGTCGTAATAATCGGGGCCGGGATTGCCGGACTCGCCACCGCCGTCTCGCTCAAGAGGCTTGGGATTAGGTCGGTGGT GCTTGAGCAGGCGGATTCGTTGAGGACTGGAGGAACCTCGCTTACGCTGTTTAAGAACGGGTGGAAGGTTCTGGACGCCATTGGAGTTGGCGATGAGCTC AGACCTCAGTTCCTCGAGATCCAAGGGATGGTGGTGAAATCACAAGACGGTAAACAGCTGCGATCCTTCAGGTTCAAAGATGAAGATCAAAGCCAAGAAG TGCGTGCTGTGGAGAGGGGAATCCTGCTGGAAACACTTGCAAACCAGCTTCCACCAGAATCGATCCGTTTCTCGTCAAAGCTGGCCAAGATCGAGACCAA GGACAACGGTGCAACTCTTCTGGAACTCACAGATGGGACGGAGGTGCTTGCAAAGATCGTTGTTGCTTGTGATGGCATTCGATCTCCGGTGGCGAAATGG ATGGGGTTCCCGGAGGCTAAATATTCAGGACATTGTGCATTCCGAGGGCTCGGAGTTTATGAGAATGGGCACCCATTCGAGCCAAGGGTGAACTATGTCT ATGGAAGAGGAATCCGTGCAGGGTATGTCCCGGTCTCAGAGACGAAGGTCTACTGGTTCGTCTGCTTCAACAGTCCTTCTCTAGGTCCAAGAGTAACAGA CCCATCCGAGCTAAAGAAACAAGCCAAAGACTTGGTGAAGAACTGGCCATCCGAGCTAAAAAACCTGATAGACATCACCCCAGATGAGACCCTAAGCAGA ACTCCGCTCGTCGATCGCTGGCTCTGGCCAGCGATCACCCCTCCGCCATCAAAAGGAGGTGTGGTTCTCGTCGGGGACGCGTGGCACCCCATGACTCCAA ACCTAGGGCAAGGTGGGTGTTGTGCGTTAGAGGACTCCATCGTTCTAGCGCGAAAACTCGCTGCTGCAATGAAGTCAGACCCACCAATACCCTCTTCTTC TTCTTCGGAAGCCATGGAACAAGCCTTCAGATCGTACGGGGACGAGAGATGGCCACGTGTATTTCCATTGACGGTTCGGGCCAACTTGGTTGGGTCGCTG TTGCAGTGGGAGAATCCTGTGGTCTGTGCAGTCAGGAACGGTGTTGTCATTCCTAAGCTGGTGAGGCTCGGGCCGATTCTCGAGCATACCAATTTCGAAT GTGAACCTCTCTACTGA
AA sequence Show only first row Show all	>Lus10000593 pacid=23143616 polypeptide=Lus10000593 locus=Lus10000593.g ID=Lus10000593.BGIv1.0 annot-version=v1.0 MAATVATPFSSPIYRRPPRNRVAIARATKSGEDDFRPRPEDVVIIGAGIAGLATAVSLKRLGIRSVVLEQADSLRTGGTSLTLFKNGWKVLDAIGVGDEL RPQFLEIQGMVVKSQDGKQLRSFRFKDEDQSQEVRAVERGILLETLANQLPPESIRFSSKLAKIETKDNGATLLELTDGTEVLAKIVVACDGIRSPVAKW MGFPEAKYSGHCAFRGLGVYENGHPFEPRVNYVYGRGIRAGYVPVSETKVYWFVCFNSPSLGPRVTDPSELKKQAKDLVKNWPSELKNLIDITPDETLSR TPLVDRWLWPAITPPPSKGGVVLVGDAWHPMTPNLGQGGCCALEDSIVLARKLAAAMKSDPPIPSSSSSEAMEQAFRSYGDERWPRVFPLTVRANLVGSL LQWENPVVCAVRNGVVIPKLVRLGPILEHTNFECEPLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10000593 [exp]	0	1
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015288 [exp]	1.4	0.9683
AT2G46100			Nuclear transport factor 2 (NT...		Lus10007918 [exp]	2.4	0.9376
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025415 [exp]	2.8	0.9575
AT1G52190			Major facilitator superfamily ...		Lus10038616 [exp]	3.2	0.9388
AT3G21670			Major facilitator superfamily ...		Lus10035317 [exp]	3.7	0.9367
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Lus10016033 [exp]	4.6	0.9472
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10029513 [exp]	6.0	0.9281
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10021824 [exp]	6.9	0.9414
AT3G02830	C3HZnF	ZFN1	zinc finger protein 1 (.1)		Lus10020196 [exp]	10.2	0.8957
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001420 [exp]	11.3	0.9334

Compare expression of checked genes

Lus10000593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.