Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47200 387 / 3e-139 AtRABD2b, AtRab1A ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) AT4G17530 385 / 1e-138 RAB1C, AtRab1C, AtRABD2c RAB GTPase homolog 1C (.1) AT1G02130 371 / 8e-133 ARA5, AtRABD2a, AtRab1B, Ara-5 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) AT3G11730 322 / 2e-113 ATFP8, AtRABD1 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) AT5G59840 252 / 1e-85 Ras-related small GTP-binding family protein (.1) AT3G46060 249 / 1e-84 ARA3, Ara-3, AtRABE1c, AtRab8A RAB GTPase homolog 8A (.1.2.3) AT3G53610 248 / 3e-84 ATRAB8, AtRab8B, AtRABE1a RAB GTPase homolog 8 (.1.2.3) AT3G09900 241 / 2e-81 AtRABE1e, AtRab8E RAB GTPase homolog E1E (.1) AT5G03520 241 / 3e-81 ATRAB-E1D, AtRab8C, AtRABE1d ARABIDOPSIS RAB HOMOLOG E1D, RAB GTPase homolog 8C (.1.2) AT4G17160 193 / 1e-62 AtRab2B, AtRABB1a RAB GTPase homolog B1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010999 [exp] 421 / 2e-152 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) Lus10036442 [exp] 320 / 1e-112 AT3G11730 350 / 2e-124 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Lus10041117 [exp] 271 / 3e-92 AT3G11730 302 / 3e-104 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Lus10037608 [exp] 250 / 2e-85 AT1G02130 255 / 1e-87 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Lus10005890 [exp] 248 / 7e-84 AT3G46060 396 / 2e-142 RAB GTPase homolog 8A (.1.2.3) Lus10005443 [exp] 245 / 5e-83 AT3G46060 394 / 2e-141 RAB GTPase homolog 8A (.1.2.3) Lus10007698 [exp] 228 / 3e-76 AT3G46060 378 / 1e-135 RAB GTPase homolog 8A (.1.2.3) Lus10024423 [exp] 225 / 3e-75 AT3G46060 376 / 7e-135 RAB GTPase homolog 8A (.1.2.3) Lus10023430 [exp] 225 / 1e-74 AT3G46060 364 / 3e-129 RAB GTPase homolog 8A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G081800 [exp] 389 / 7e-140 AT1G02130 391 / 9e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.001G080400 [exp] 383 / 1e-137 AT1G02130 387 / 2e-139 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.002G138400 [exp] 380 / 1e-136 AT1G02130 393 / 1e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.001G152800 [exp] 379 / 4e-136 AT1G02130 382 / 2e-137 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.014G049400 [exp] 378 / 1e-135 AT1G02130 390 / 2e-140 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.004G226600 [exp] 328 / 6e-116 AT3G11730 364 / 4e-130 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Potri.003G004000 [exp] 328 / 9e-116 AT3G11730 359 / 2e-128 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Potri.009G027900 [exp] 253 / 3e-86 AT3G46060 341 / 8e-121 RAB GTPase homolog 8A (.1.2.3) Potri.008G051700 [exp] 253 / 6e-86 AT3G46060 329 / 7e-116 RAB GTPase homolog 8A (.1.2.3) Potri.010G208900 [exp] 252 / 1e-85 AT3G46060 349 / 5e-124 RAB GTPase homolog 8A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10000595 pacid=23143615 polypeptide=Lus10000595 locus=Lus10000595.g ID=Lus10000595.BGIv1.0 annot-version=v1.0 ATGAACACTGAATACGATTACTTGTTCAAGCTTTTGCTTATTGGAGATTCTGGAGTCGGCAAATCGTGTCTGCTTTTGAGATTCGCTGATGATTCGTACC TGGACAGCTACATCAGTACCATAGGAGTCGATTTCAAAATCCGCACCGTGGAGCAGGACGGGAAGACCATCAAACTCCAAATTTGGGACACAGCCGGGCA AGAGCGATTTAGGACGATCACCAGCAGTTACTACAGGGGTGCTCATGGGATCATTGTTGTTTATGATGTCACGGACCAAGAGAGTTTCAACAACGTAAAG CAGTGGCTGAATGAGATTGACCGCTACGCTAGCGAGCATGTGAACAAGCTTCTCGTGGGAAACAAGAGTGATCTCACTAGCAGCAAAGTCGTTTCGTACG AAACGGGGAAGGCATTGGCTGATGAACTCGGTATCCCGTTCATGGAGACGAGTGCCAAGAACGCGTCCAATGTAGAAGACGCTTTCATGGCGATGTCAGC TGCAATCAAGACAAGGATGGCTAGCCAGCCCACGAACAATGCCAAGCCCCCGACTGTCCAAATCCGCGGAGAACCGGTTAACCAGAAGTCGGGTTGCTGC TCTTCTTGA
AA sequence Show only first row Show all	>Lus10000595 pacid=23143615 polypeptide=Lus10000595 locus=Lus10000595.g ID=Lus10000595.BGIv1.0 annot-version=v1.0 MNTEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK QWLNEIDRYASEHVNKLLVGNKSDLTSSKVVSYETGKALADELGIPFMETSAKNASNVEDAFMAMSAAIKTRMASQPTNNAKPPTVQIRGEPVNQKSGCC SS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10000595 [exp]	0	1
AT3G52710			unknown protein		Lus10014206 [exp]	2.0	0.8279
AT1G75950		UIP1, SKP1A, AT...	UFO INTERACTING PROTEIN 1, ARA...		Lus10013575 [exp]	3.5	0.8208
AT5G36290			Uncharacterized protein family...		Lus10020195 [exp]	6.3	0.7600
AT4G09830			Uncharacterised conserved prot...		Lus10028732 [exp]	8.9	0.7644
AT1G35510			O-fucosyltransferase family pr...		Lus10009450 [exp]	9.2	0.7522
AT1G25400			unknown protein		Lus10041438 [exp]	10.2	0.7794
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10036727 [exp]	11.8	0.7829
AT3G58670			Protein of unknown function (D...		Lus10029828 [exp]	12.4	0.7329
AT2G40095			Alpha/beta hydrolase related p...		Lus10014849 [exp]	13.7	0.7655
AT1G12440			A20/AN1-like zinc finger famil...		Lus10007015 [exp]	15.2	0.7581

Compare expression of checked genes

Lus10000595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.