Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16835 545 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 392 / 1e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 338 / 5e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03880 331 / 6e-108 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 331 / 6e-107 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09410 328 / 5e-106 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G44880 322 / 4e-105 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G27610 328 / 3e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G13410 311 / 5e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G56690 311 / 2e-99 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010998 [exp] 822 / 0 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013540 [exp] 374 / 7e-123 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 337 / 1e-109 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 335 / 6e-108 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019797 [exp] 328 / 7e-107 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013149 [exp] 328 / 6e-106 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014113 [exp] 326 / 6e-106 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001617 [exp] 322 / 2e-104 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 323 / 1e-103 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G081700 [exp] 584 / 0 AT4G16835 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G048800 [exp] 373 / 2e-122 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 350 / 7e-114 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G005400 [exp] 339 / 4e-110 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G006400 [exp] 335 / 1e-108 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 335 / 3e-108 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G038400 [exp] 332 / 3e-108 AT2G35030 701 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G125500 [exp] 330 / 1e-107 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G208000 [exp] 330 / 9e-107 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 324 / 4e-105 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10000597 pacid=23143626 polypeptide=Lus10000597 locus=Lus10000597.g ID=Lus10000597.BGIv1.0 annot-version=v1.0 ATGTCGTTCTTCGATCGGATTCCTAACAAGGACACTGCTTCCTACAACACGATGATCTCCGGATTCGCTCAGAATCGAAGAATGGCGGAAGCTGCCTGGC TGTTTGACGCAATGCCTGTGAAGAAGAATGTCGTCACGTGGAACGCCATGATCTCTGGCTACGTGGAATGTGGAGAAATGGAGGAAGCAGTGAAGCTCTT CGAAATGGCTCCGGTTAAGACTGTGGTGGCTCGGACTGCGATCTTGACTGGGACGATGAAGCTTGGGGATGTGGAGATGGCAGAGAGGATGTTTATGGAG ATCCTTGAGAAGAATTTGGTGACTTGGAATGCGATGATTTCGGGCTATGTGGAAAATGGTAGAGCTGAGGATGGAGTGAAGTTGTTTAAGGAGATGGTAA GGAACGGTTTCGGGGCGAATTCTTCGACATTGAGCAGTGTTCTGTTGGGGTGCAGTGAGCTATCTGCCCTGCAATTAGGGAAGCAGGTTCATCAATGGGT GTGTAAGTCTCCGTTGAGCTCAAAAAATCGAACTGTTTCGATATCGTTGATTAGCATGTACTGTAAGTGTGGTGATCTGGAAGACGGTTATAGATTGTTC ATGGAGATGGAAGGTAAAGATGTTGTGGCGTGGAACGCGATGATTTCGGGGTACGCTCAGAACGGAGAAGGATTGATCGCGCTTAATTTATTCGATCGGA TGAAGGAACGTTCGGTTAAGCCAGACTGGATAACTTTCGTTGCGGTTTTGCTAGGGTGTAATCATGCTGGGTTGGTTGATGTCGGTAGGGAATATTTTGA TTCGATGAGGAAGGATTACGGGGTGGAGCCTAGGCCGGATCATTATAGTTGTATGGTTGATCTACTAAGTCGAGCGGGTAAGCTTGACTCAGCAGTCGAG TTGATCAAGAACATGCCTTTCAAACCTCATCCGGCTATATACGGGACCCTTCTGGGTGCCTGCAGGGTGCACAAGAATGCAGAAGTTGCAGAGTTTGCAG CAAAGAACTTGGCCGAGCTCGATCCCATGAGCTCGACTGCTTACGTGCAGCTCGCTAACGTGTACGCAGCAACCAAGAAATGGGACGATGTTGCTAGAGT TTGTCGATCGATGAAGAGAAGCAATGTGGTGAAGATGCCTGGTTACAGCTGGATCGATGTCAAGAACAAAGTCCACGAGTTTCGATCAGGGGACCGGGTT CATCCCGAGTTGGATTCGATTCACCGGAAGCTGGACGACCTGGAGAAGAAGATGAAGTGA
AA sequence Show only first row Show all	>Lus10000597 pacid=23143626 polypeptide=Lus10000597 locus=Lus10000597.g ID=Lus10000597.BGIv1.0 annot-version=v1.0 MSFFDRIPNKDTASYNTMISGFAQNRRMAEAAWLFDAMPVKKNVVTWNAMISGYVECGEMEEAVKLFEMAPVKTVVARTAILTGTMKLGDVEMAERMFME ILEKNLVTWNAMISGYVENGRAEDGVKLFKEMVRNGFGANSSTLSSVLLGCSELSALQLGKQVHQWVCKSPLSSKNRTVSISLISMYCKCGDLEDGYRLF MEMEGKDVVAWNAMISGYAQNGEGLIALNLFDRMKERSVKPDWITFVAVLLGCNHAGLVDVGREYFDSMRKDYGVEPRPDHYSCMVDLLSRAGKLDSAVE LIKNMPFKPHPAIYGTLLGACRVHKNAEVAEFAAKNLAELDPMSSTAYVQLANVYAATKKWDDVARVCRSMKRSNVVKMPGYSWIDVKNKVHEFRSGDRV HPELDSIHRKLDDLEKKMK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16835			Tetratricopeptide repeat (TPR)...		Lus10000597 [exp]	0	1
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10014257 [exp]	7.1	0.6728
AT5G18130			unknown protein		Lus10005702 [exp]	10.6	0.7051
AT2G36730			Pentatricopeptide repeat (PPR)...		Lus10040171 [exp]	14.8	0.6325
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10027447 [exp]	18.4	0.6586
AT1G27990			unknown protein		Lus10037043 [exp]	27.5	0.6246
AT5G18130			unknown protein		Lus10020284 [exp]	28.0	0.6689
AT3G20500		ATPAP18, PAP18	purple acid phosphatase 18 (.1...		Lus10019625 [exp]	31.6	0.6559
AT5G41620			unknown protein		Lus10003027 [exp]	45.6	0.6193
AT5G38050			RNA polymerase II transcriptio...		Lus10009106 [exp]	47.7	0.6212
AT1G15060			Uncharacterised conserved prot...		Lus10000099 [exp]	52.4	0.6233

Compare expression of checked genes

Lus10000597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.