Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17520 102 / 6e-26 Hyaluronan / mRNA binding family (.1) AT4G16830 93 / 6e-23 Hyaluronan / mRNA binding family (.1.2.3) AT5G47210 89 / 7e-21 Hyaluronan / mRNA binding family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040157 [exp] 136 / 1e-38 AT4G17520 181 / 1e-53 Hyaluronan / mRNA binding family (.1) Lus10004362 [exp] 135 / 2e-38 AT4G17520 183 / 1e-54 Hyaluronan / mRNA binding family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G138300 [exp] 132 / 3e-37 AT4G17520 133 / 1e-35 Hyaluronan / mRNA binding family (.1) Potri.003G081600 [exp] 121 / 5e-33 AT4G17520 180 / 2e-53 Hyaluronan / mRNA binding family (.1) Potri.014G049300 [exp] 121 / 7e-33 AT4G16830 159 / 2e-46 Hyaluronan / mRNA binding family (.1.2.3) Potri.001G153000 [exp] 109 / 2e-28 AT4G17520 128 / 1e-33 Hyaluronan / mRNA binding family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04774 [flax] [poplar] HABP4_PAI-RBP1 Hyaluronan / mRNA binding family
Representative CDS sequence Show only first row Show all	>Lus10000599 pacid=23143624 polypeptide=Lus10000599 locus=Lus10000599.g ID=Lus10000599.BGIv1.0 annot-version=v1.0 ATGAAACGTAACGGCGCTGGCTCAGGGAATTGGGGAAAGGATGATGAGATTGTTCCGATCGAGGAGATTTCTCCGGTGGAGAATGATGTGAATGCAACTG CTGAAAAGCAGCAGCCTGATGCCGAGGGAGATGCTACTGATGCCAACAAGGACACTCCTCCAAAAGAGGAAGATCCTGAGGAGAAGGAGATGACATTGAG TGAATACGAGAAGGTTTATGAGGAGAAGAGGAAGGCTCTGCTCTCTCTGAAGACTGCTGAGGAAAGGAAGGTTGATGCCAAGGCATTTGCCGCCATGCAG CAACTGTCCTGCAAGAAGGAAAATGACGAGATCTTTGCCAAACTGGGTGCTGACAAGGAGAAGAAGAGGGAAGCTGCTGAGAGGGAAGAGAAAGCTAAGA AGGCTGTGAACATTAACGAGTTCCTGAAGCCTGCTGAAGGCGAGACCTACAGAGGTGCCCGCGGAGGAAGAGGACGTGGCCGCGGTGGAAGGCGAGGCAA CGACCGTGGAGGATACGTCTTTGGAGGCACGGCCCCATCGATTGAGGACCCCGGCCAGTTCCCCTCGCTGGGCGGCGGGAAGTGA
AA sequence Show only first row Show all	>Lus10000599 pacid=23143624 polypeptide=Lus10000599 locus=Lus10000599.g ID=Lus10000599.BGIv1.0 annot-version=v1.0 MKRNGAGSGNWGKDDEIVPIEEISPVENDVNATAEKQQPDAEGDATDANKDTPPKEEDPEEKEMTLSEYEKVYEEKRKALLSLKTAEERKVDAKAFAAMQ QLSCKKENDEIFAKLGADKEKKREAAEREEKAKKAVNINEFLKPAEGETYRGARGGRGRGRGGRRGNDRGGYVFGGTAPSIEDPGQFPSLGGGK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17520			Hyaluronan / mRNA binding fami...		Lus10000599 [exp]	0	1
AT4G17520			Hyaluronan / mRNA binding fami...		Lus10040157 [exp]	1.0	0.8188
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10017890 [exp]	4.9	0.7906
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10035065 [exp]	7.1	0.7849
AT4G15770			RNA binding (.1)		Lus10000507 [exp]	8.5	0.7899
AT2G31610			Ribosomal protein S3 family pr...		Lus10033442 [exp]	9.1	0.8001
AT3G22660			rRNA processing protein-relate...		Lus10031698 [exp]	9.5	0.7587
AT3G05560			Ribosomal L22e protein family ...		Lus10026555 [exp]	12.0	0.7604
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Lus10030200 [exp]	14.4	0.7567
AT5G62300			Ribosomal protein S10p/S20e fa...		Lus10031705 [exp]	14.7	0.7375
AT1G80860		ATPLMT	ARABIDOPSIS PHOSPHOLIPID N-MET...		Lus10026087 [exp]	14.9	0.7281

Compare expression of checked genes

Lus10000599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.