Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16820 304 / 5e-101 PLA-I{beta]2 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) AT2G44810 204 / 5e-64 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) AT1G30370 176 / 2e-51 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT1G51440 166 / 9e-48 alpha/beta-Hydrolases superfamily protein (.1) AT1G06800 165 / 1e-47 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT2G30550 160 / 8e-46 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G05800 134 / 2e-36 DGL DONGLE, alpha/beta-Hydrolases superfamily protein (.1) AT2G31690 132 / 1e-35 alpha/beta-Hydrolases superfamily protein (.1) AT2G31100 129 / 6e-35 alpha/beta-Hydrolases superfamily protein (.1) AT4G18550 125 / 2e-33 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010997 [exp] 529 / 0 AT4G16820 551 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10004364 [exp] 443 / 2e-155 AT4G16820 587 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10040158 [exp] 437 / 5e-153 AT4G16820 573 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10038526 [exp] 193 / 9e-58 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10042914 [exp] 189 / 2e-57 AT2G44810 464 / 1e-163 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 189 / 3e-57 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 183 / 5e-55 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10041165 [exp] 176 / 2e-52 AT2G44810 464 / 4e-164 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10023280 [exp] 173 / 2e-50 AT1G30370 537 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G081500 [exp] 421 / 6e-147 AT4G16820 558 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G153100 [exp] 419 / 2e-146 AT4G16820 575 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G047700 [exp] 208 / 8e-65 AT2G44810 491 / 9e-174 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G047900 [exp] 196 / 4e-60 AT2G44810 557 / 0.0 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G137900 [exp] 192 / 9e-59 AT2G44810 543 / 0.0 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.009G057900 [exp] 180 / 3e-53 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G263200 [exp] 174 / 5e-51 AT1G30370 607 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G218500 [exp] 174 / 7e-51 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G044700 [exp] 171 / 8e-50 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G051900 [exp] 166 / 4e-48 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10000600 pacid=23143621 polypeptide=Lus10000600 locus=Lus10000600.g ID=Lus10000600.BGIv1.0 annot-version=v1.0 ATGGGAAGGAGGGATATAGTCATCGCCTTACGTGGCACATCCACTTGTCTAGAATGGGCCGAAAACATGAGAGCCCAATTAGTCCCGGTATCCAAAACCG AATCCGACTCGACCCAAAACCAACCAAAAGTCGAATGTGGCTTCCAAAGCCTATACAAGACGAAAGGCGCCCACGTGGCGAGCCTAGCCCAGTCCGTAAC TGACGAGGTAAAACGCCTCATGGAACGATACAAGGGCGAGACCCTAAGCATAACCGTGACAGGCCATAGCCTTGGCGCAGCCCTATCGTTACTCGTGGCA GACGAGCTCAGCACGTGCTCCCCCGAAGTCCCACCCGTAGCGGTTTTTTCCTTCGGGGGACCACGCGTCGGCAACAGGGCGTTCGGCAACCGACTCGCAG ACAAATCAGTCAAGGTACTCCGGATCGTGAACGACCAAGACCTGATCACTCGAGTCCCCGGTCTGCCGCCCCTGGTCGACGGATTGACGAACGACACCTA CGCCCACTTGGGGACGGAGCTACGAGTCGACACAAAGATGTCCCCGTACCTGAAACCGAATGCTGACGTGGCATGCTGCCACGACCTCGAGGCCTACTTG CACTTGGTGGATGGGTTTACGGGGAGTGATTGCCCCTTTAGGTCGAATGCTAAGAGGAGTTTGGTTAAGTTGTTGAGTGAGCAAAGGCCGAATGTGAAGC AATTGTACACAAACAAGGCTCATGCTTTGAGCTTGAAATTCGAAAGGCAAGGCCTTGCGGCTAGTGGGTGCTTGCCTAGTCCATCTTCTTGA
AA sequence Show only first row Show all	>Lus10000600 pacid=23143621 polypeptide=Lus10000600 locus=Lus10000600.g ID=Lus10000600.BGIv1.0 annot-version=v1.0 MGRRDIVIALRGTSTCLEWAENMRAQLVPVSKTESDSTQNQPKVECGFQSLYKTKGAHVASLAQSVTDEVKRLMERYKGETLSITVTGHSLGAALSLLVA DELSTCSPEVPPVAVFSFGGPRVGNRAFGNRLADKSVKVLRIVNDQDLITRVPGLPPLVDGLTNDTYAHLGTELRVDTKMSPYLKPNADVACCHDLEAYL HLVDGFTGSDCPFRSNAKRSLVKLLSEQRPNVKQLYTNKAHALSLKFERQGLAASGCLPSPSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Lus10000600 [exp]	0	1
AT5G66170		STR18	sulfurtransferase 18 (.1.2.3)		Lus10041895 [exp]	3.2	0.9165
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Lus10000144 [exp]	5.4	0.9363
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10042857 [exp]	6.6	0.9168
AT3G51520			diacylglycerol acyltransferase...		Lus10039135 [exp]	13.4	0.9213
AT3G51660			Tautomerase/MIF superfamily pr...		Lus10012222 [exp]	17.0	0.8986
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10027638 [exp]	18.5	0.9144
AT3G09760			RING/U-box superfamily protein...		Lus10026501 [exp]	21.7	0.8816
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10004870 [exp]	22.4	0.9181
AT5G66170		STR18	sulfurtransferase 18 (.1.2.3)		Lus10041894 [exp]	23.9	0.8986
AT5G46080			Protein kinase superfamily pro...		Lus10025455 [exp]	26.1	0.8779

Compare expression of checked genes

Lus10000600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.