Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63460 256 / 8e-89 ATGPX8 glutathione peroxidase 8 (.1) AT4G11600 236 / 5e-80 LSC803, PHGPX, ATGPX6 glutathione peroxidase 6 (.1) AT2G31570 218 / 9e-74 ATGPX2 glutathione peroxidase 2 (.1) AT2G43350 219 / 2e-73 ATGPX3 glutathione peroxidase 3 (.1.2) AT4G31870 214 / 4e-71 ATGPX7 glutathione peroxidase 7 (.1) AT2G25080 206 / 6e-68 ATGPX1 glutathione peroxidase 1 (.1) AT3G63080 202 / 3e-67 ATGPX5, MEE42 maternal effect embryo arrest 42, glutathione peroxidase 5 (.1) AT2G48150 196 / 9e-65 ATGPX4 glutathione peroxidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008023 [exp] 313 / 8e-110 AT1G63460 265 / 9e-91 glutathione peroxidase 8 (.1) Lus10008022 [exp] 255 / 4e-88 AT4G11600 301 / 1e-105 glutathione peroxidase 6 (.1) Lus10008499 [exp] 252 / 5e-86 AT4G11600 307 / 2e-106 glutathione peroxidase 6 (.1) Lus10008537 [exp] 249 / 8e-86 AT4G11600 299 / 1e-104 glutathione peroxidase 6 (.1) Lus10000603 [exp] 232 / 5e-79 AT4G11600 256 / 9e-88 glutathione peroxidase 6 (.1) Lus10027021 [exp] 226 / 7e-77 AT2G31570 266 / 2e-92 glutathione peroxidase 2 (.1) Lus10042418 [exp] 217 / 4e-72 AT4G31870 329 / 2e-115 glutathione peroxidase 7 (.1) Lus10029651 [exp] 210 / 3e-70 AT2G48150 274 / 2e-95 glutathione peroxidase 4 (.1) Lus10026887 [exp] 211 / 7e-70 AT4G31870 332 / 3e-116 glutathione peroxidase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G105100 [exp] 273 / 3e-95 AT1G63460 283 / 5e-99 glutathione peroxidase 8 (.1) Potri.003G126100 [exp] 251 / 1e-85 AT4G11600 307 / 9e-107 glutathione peroxidase 6 (.1) Potri.001G105200 [exp] 244 / 8e-84 AT4G11600 298 / 3e-104 glutathione peroxidase 6 (.1) Potri.007G126600 [exp] 228 / 3e-77 AT2G31570 281 / 1e-97 glutathione peroxidase 2 (.1) Potri.006G265400 [exp] 209 / 3e-69 AT2G25080 343 / 6e-121 glutathione peroxidase 1 (.1) Potri.014G138800 [exp] 200 / 2e-66 AT2G48150 271 / 1e-94 glutathione peroxidase 4 (.1) Potri.018G017500 [exp] 146 / 4e-45 AT2G25080 209 / 4e-69 glutathione peroxidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00255 [flax] [poplar] GSHPx Glutathione peroxidase
Representative CDS sequence Show only first row Show all	>Lus10000601 pacid=23144305 polypeptide=Lus10000601 locus=Lus10000601.g ID=Lus10000601.BGIv1.0 annot-version=v1.0 ATGTCGAGCGAAGAACAACAGAGCCCGCATTCCATTTACGATTTCACTGTAAAGAATGCTAAGGGACATGCTGTAAGTCTCGGTATCTACAAGGGGAAGG TCCTGCTTATTATCAATGTTGCTTCCAAATGTGGCATGACCAACTCAAACCACACGGAGCTGAATGCTTTGTATCACAAGTACAAAGATCAAGGGTTGGA GATACTGGCATTCCCTTGCAACCAGTTTGGAGCAGAAGAACCAGGAAACAATGACGAGATTGAAGAATTCGTTTGCAGTAGATTCAAGTCCGAGTTCCCC ATATTCGACAAGATTGAGGTGAATGGAGAGAATGCATCCCCACTGTACAAGTTGTTGAAGACAGGGAAATGGGGAATTTTCGGCGACGACATCCAATGGA ACTTTGTCAAGTTCCTTGTCAACAAACAAGGCCAAGTTGTTGATCGTTACTACCCAACAACTTCTCCCCTAAGCATCGAGGTAAAGACATAA
AA sequence Show only first row Show all	>Lus10000601 pacid=23144305 polypeptide=Lus10000601 locus=Lus10000601.g ID=Lus10000601.BGIv1.0 annot-version=v1.0 MSSEEQQSPHSIYDFTVKNAKGHAVSLGIYKGKVLLIINVASKCGMTNSNHTELNALYHKYKDQGLEILAFPCNQFGAEEPGNNDEIEEFVCSRFKSEFP IFDKIEVNGENASPLYKLLKTGKWGIFGDDIQWNFVKFLVNKQGQVVDRYYPTTSPLSIEVKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10000601 [exp]	0	1
AT5G19930			Protein of unknown function DU...		Lus10017753 [exp]	1.4	0.8778
AT4G27120			unknown protein		Lus10043066 [exp]	2.4	0.8587
AT1G76200			unknown protein		Lus10012279 [exp]	3.5	0.8753
AT2G36410			Family of unknown function (DU...		Lus10023876 [exp]	3.9	0.8617
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030583 [exp]	6.0	0.8671
AT5G60335			Thioesterase superfamily prote...		Lus10009162 [exp]	6.7	0.8371
AT3G52230			unknown protein		Lus10038643 [exp]	7.0	0.8579
AT5G09830			BolA-like family protein (.1)		Lus10020861 [exp]	7.1	0.8685
AT3G27100			unknown protein		Lus10012534 [exp]	7.2	0.8399
AT4G04780		MED21	mediator 21 (.1)		Lus10024509 [exp]	8.7	0.8259

Compare expression of checked genes

Lus10000601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.