Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67320 683 / 0 EMB2813 EMBRYO DEFECTIVE 2813, DNA primase, large subunit family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G169300 [exp] 755 / 0 AT1G67320 663 / 0.0 EMBRYO DEFECTIVE 2813, DNA primase, large subunit family (.1.2.3) Potri.017G053801 [exp] 108 / 2e-28 AT1G67320 108 / 6e-29 EMBRYO DEFECTIVE 2813, DNA primase, large subunit family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0242 [flax] [poplar] DNA_primase_lrg PF04104 [flax] [poplar] DNA_primase_lrg Eukaryotic and archaeal DNA primase, large subunit
Representative CDS sequence Show only first row Show all	>Lus10000602 pacid=23144299 polypeptide=Lus10000602 locus=Lus10000602.g ID=Lus10000602.BGIv1.0 annot-version=v1.0 ATGGAGATAATTCGTCCTCAACTGAAGTCTTCGACCAGCGACCACGTTCCCACACTTCCACTCTATCGTTCAGCTCCAGCTCTTGAAGTTCGACTCGAGG AATTTGAGCTCTATGCCATAGATCGCCTCAAAGTTCTTACAGGGATTTCCGATGGATTATCCCGCGGGAAACGACCTGAAGAAATGGAGAGATTGGTTTC TGAACTGTGGAAATCTAATATGAGACATCCGCTAGCATCGGAGGTTGCCAACAAAGATATCATCTCACATTTCGTTCTGCGCCTCGTCTACTGTAGAACG GAGGAACTAAGGAAGTGGTTTCTATCTATGGAGACAACTCTCTTTCGCCACCGATTCCGACTTCAGAGTGCTGAAGCTCAGAGGGCTTTACTGTCTGAGT TTCACCTTCCTTACAAGGCAGTCAGTGCTGAAGAATTTGAGGCTCTAAAGGACAAACTGAGTCAAGTTTCCCGTTCAACCAACCAGACGTTGCCTACTGC TGATGCCATATTCTACAAGGTTCCATTTGAAGAAGTTCCCGAACTTGTTGCTGGTCGTAGAGTTTTCCTTAGCAAGGGTTATGCTTATGTTGCTATGAAT CAGGTCGTGTCACTTGTTGCTACTCAATTTCGAAGTCTTCTATCAAAGGCACTCACTCTAACTAACAGGAAATGGATCTCTAGCATCAGGGAACAGGAGA GGGATAGGTTAACCCCTATCGTAGAAGCCTTATCAACAAGCTACTTGGGTCCTGACTATTCTCAGGCAAGGGAATTTGGAGATATATCACTTAAGGACAT TGATATCGTGGCCAAGAGCTCATTCCCCTTGTGCATGAGCCATCTATTTGACAAACTTCGAGAAGACCATCATTTAAAGCACTGGGGGAGAATGCAGTTG GGTCGGTTTCTCAAGGGTGTTGGGTTGAAGTTGGATGATGCTCTTGCATTCTGGAAGGCCGAGTTCTCTCAAAAGGTTGGGGCAGAGAGGTTTGACAAAG AATATGCATATAGCATTCGTCACAATTATGGAAAGGAAGGGAAGAGAATGGACTATGCTCCTTATTCTTGTCAAAAGATCATCTCCTTAACACCTAGTGT AGGAGATCACCATGGATGCCCTTATCGACAGTTTAGCCAAGAGAACTTACGAGCGGCACTGTGTAAGATGGGAGTAAGCAGTGGCGGGGTGGAGGATGTG ATGGACAAAGTCCGGAATAAACATTATCAGTTGGCATGCACCTTAACATTTGAAGCTGTTCATGGATGTCAAAATGATGCTGGAATTAATCATCCTAATC AGTACTTCAGCGATAGCCAGAAGATACTCAAGTCCAAGGTAATATGGTGGTTCACTTGTACTAGCAAGCATATGTTGTTCATCAGTTCATAA
AA sequence Show only first row Show all	>Lus10000602 pacid=23144299 polypeptide=Lus10000602 locus=Lus10000602.g ID=Lus10000602.BGIv1.0 annot-version=v1.0 MEIIRPQLKSSTSDHVPTLPLYRSAPALEVRLEEFELYAIDRLKVLTGISDGLSRGKRPEEMERLVSELWKSNMRHPLASEVANKDIISHFVLRLVYCRT EELRKWFLSMETTLFRHRFRLQSAEAQRALLSEFHLPYKAVSAEEFEALKDKLSQVSRSTNQTLPTADAIFYKVPFEEVPELVAGRRVFLSKGYAYVAMN QVVSLVATQFRSLLSKALTLTNRKWISSIREQERDRLTPIVEALSTSYLGPDYSQAREFGDISLKDIDIVAKSSFPLCMSHLFDKLREDHHLKHWGRMQL GRFLKGVGLKLDDALAFWKAEFSQKVGAERFDKEYAYSIRHNYGKEGKRMDYAPYSCQKIISLTPSVGDHHGCPYRQFSQENLRAALCKMGVSSGGVEDV MDKVRNKHYQLACTLTFEAVHGCQNDAGINHPNQYFSDSQKILKSKVIWWFTCTSKHMLFISS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67320		EMB2813	EMBRYO DEFECTIVE 2813, DNA pri...		Lus10000602 [exp]	0	1
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10004453 [exp]	2.0	0.9594
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10036982 [exp]	3.2	0.9539
AT5G13060		ABAP1	ARMADILLO BTB protein 1 (.1)		Lus10022039 [exp]	3.2	0.9647
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Lus10017491 [exp]	3.5	0.9560
AT3G14740			RING/FYVE/PHD zinc finger supe...		Lus10038142 [exp]	4.2	0.9591
AT1G61000			unknown protein		Lus10020820 [exp]	5.5	0.9379
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Lus10028795 [exp]	6.5	0.9494
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Lus10042941 [exp]	8.9	0.9452
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Lus10035209 [exp]	10.1	0.9138
AT4G01270			RING/U-box superfamily protein...		Lus10018817 [exp]	10.6	0.9342

Compare expression of checked genes

Lus10000602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.