Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11600 255 / 2e-87 LSC803, PHGPX, ATGPX6 glutathione peroxidase 6 (.1) AT4G31870 217 / 2e-72 ATGPX7 glutathione peroxidase 7 (.1) AT1G63460 212 / 2e-71 ATGPX8 glutathione peroxidase 8 (.1) AT2G31570 211 / 1e-70 ATGPX2 glutathione peroxidase 2 (.1) AT2G25080 207 / 2e-68 ATGPX1 glutathione peroxidase 1 (.1) AT3G63080 201 / 1e-66 ATGPX5, MEE42 maternal effect embryo arrest 42, glutathione peroxidase 5 (.1) AT2G43350 201 / 3e-66 ATGPX3 glutathione peroxidase 3 (.1.2) AT2G48150 195 / 2e-64 ATGPX4 glutathione peroxidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008022 [exp] 298 / 5e-105 AT4G11600 301 / 1e-105 glutathione peroxidase 6 (.1) Lus10008499 [exp] 274 / 9e-95 AT4G11600 307 / 2e-106 glutathione peroxidase 6 (.1) Lus10008537 [exp] 271 / 2e-94 AT4G11600 299 / 1e-104 glutathione peroxidase 6 (.1) Lus10000601 [exp] 231 / 9e-79 AT1G63460 256 / 2e-88 glutathione peroxidase 8 (.1) Lus10008023 [exp] 228 / 5e-76 AT1G63460 265 / 9e-91 glutathione peroxidase 8 (.1) Lus10027021 [exp] 219 / 4e-74 AT2G31570 266 / 2e-92 glutathione peroxidase 2 (.1) Lus10042418 [exp] 216 / 7e-72 AT4G31870 329 / 2e-115 glutathione peroxidase 7 (.1) Lus10029651 [exp] 214 / 7e-72 AT2G48150 274 / 2e-95 glutathione peroxidase 4 (.1) Lus10026887 [exp] 214 / 6e-71 AT4G31870 332 / 3e-116 glutathione peroxidase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G105200 [exp] 261 / 2e-90 AT4G11600 298 / 3e-104 glutathione peroxidase 6 (.1) Potri.003G126100 [exp] 258 / 1e-88 AT4G11600 307 / 9e-107 glutathione peroxidase 6 (.1) Potri.001G105100 [exp] 236 / 2e-80 AT1G63460 283 / 5e-99 glutathione peroxidase 8 (.1) Potri.007G126600 [exp] 225 / 5e-76 AT2G31570 281 / 1e-97 glutathione peroxidase 2 (.1) Potri.006G265400 [exp] 214 / 3e-71 AT2G25080 343 / 6e-121 glutathione peroxidase 1 (.1) Potri.014G138800 [exp] 199 / 4e-66 AT2G48150 271 / 1e-94 glutathione peroxidase 4 (.1) Potri.018G017500 [exp] 146 / 3e-45 AT2G25080 209 / 4e-69 glutathione peroxidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00255 [flax] [poplar] GSHPx Glutathione peroxidase
Representative CDS sequence Show only first row Show all	>Lus10000603 pacid=23144300 polypeptide=Lus10000603 locus=Lus10000603.g ID=Lus10000603.BGIv1.0 annot-version=v1.0 ATGGCTACCAATTCCGAATCTCGTAAGTCCATCTACGACTTCACTGTTAAGGATGCTAGAGGGAATGATGTTGATCTCAGTATCTACAAGGAAAAAGTTC TTTTGATCGTTAATGTTGCCTCCCAATGCAGATTGACCAATTCCAACTACACTGAGCTGACTCAGTTATGCCAGAAATACAAAGATCAAGGTATGGAGAT CTTGGCATTTTCTTACAATCAGTTTGGGTCTCAGGAACTAGGCAACAATGATCAAATTGTGGAGTTTGCTTGTACTCGTTTCAAGGCCGAGTTCCCCATA TTCGACAAGGTTGATGTGAATGGAAAAGAGGTTGCTCCAGTCTACAAGTACCTCAAGGCGAGCAAAAGTGGAATCTTTGGGGATGGTATCAAGTGGAACT TCACCAAGTTCCTCGTCAACAAAGAGGGTCAGGTGGTTGATCGCTACGCTCCTACCACCTCCCCTCTCAGCATTAAGGTACCGGAAATCGCTTACTAG
AA sequence Show only first row Show all	>Lus10000603 pacid=23144300 polypeptide=Lus10000603 locus=Lus10000603.g ID=Lus10000603.BGIv1.0 annot-version=v1.0 MATNSESRKSIYDFTVKDARGNDVDLSIYKEKVLLIVNVASQCRLTNSNYTELTQLCQKYKDQGMEILAFSYNQFGSQELGNNDQIVEFACTRFKAEFPI FDKVDVNGKEVAPVYKYLKASKSGIFGDGIKWNFTKFLVNKEGQVVDRYAPTTSPLSIKVPEIAY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10000603 [exp]	0	1
AT1G76200			unknown protein		Lus10012279 [exp]	3.0	0.8598
AT5G63905			unknown protein		Lus10007744 [exp]	4.5	0.8026
AT1G27695			glycine-rich protein (.1.2)		Lus10032855 [exp]	6.5	0.8313
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Lus10015014 [exp]	6.7	0.7916
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10017390 [exp]	7.1	0.8460
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10013539 [exp]	9.0	0.8027
AT4G29070			Phospholipase A2 family protei...		Lus10035314 [exp]	10.6	0.8073
AT2G27830			unknown protein		Lus10020544 [exp]	11.5	0.7785
AT2G30330		BLOS1	BLOC subunit 1, GCN5L1 family ...		Lus10030147 [exp]	12.8	0.8024
AT5G63905			unknown protein		Lus10018677 [exp]	13.6	0.7701

Compare expression of checked genes

Lus10000603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.