Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63450 572 / 0 RHS8 root hair specific 8 (.1) AT5G41250 553 / 0 Exostosin family protein (.1) AT2G20370 337 / 4e-108 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT2G29040 317 / 1e-99 Exostosin family protein (.1) AT4G13990 309 / 1e-98 Exostosin family protein (.1) AT2G32750 308 / 1e-98 Exostosin family protein (.1) AT2G31990 306 / 5e-98 Exostosin family protein (.1) AT5G62220 298 / 1e-94 ATGT18 glycosyltransferase 18 (.1) AT1G68470 287 / 7e-91 Exostosin family protein (.1) AT2G32740 287 / 1e-90 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016532 [exp] 339 / 3e-110 AT2G29040 546 / 0.0 Exostosin family protein (.1) Lus10022862 [exp] 332 / 2e-106 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10001578 [exp] 329 / 2e-105 AT2G29040 566 / 0.0 Exostosin family protein (.1) Lus10004967 [exp] 328 / 3e-105 AT2G29040 573 / 0.0 Exostosin family protein (.1) Lus10024961 [exp] 329 / 4e-105 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10010677 [exp] 325 / 6e-105 AT2G32750 497 / 7e-173 Exostosin family protein (.1) Lus10001028 [exp] 322 / 1e-103 AT4G13990 499 / 1e-173 Exostosin family protein (.1) Lus10007426 [exp] 320 / 5e-103 AT2G32750 505 / 5e-176 Exostosin family protein (.1) Lus10031685 [exp] 315 / 7e-101 AT5G62220 622 / 0.0 glycosyltransferase 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G105300 [exp] 695 / 0 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.009G032500 [exp] 340 / 9e-109 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 337 / 1e-108 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.014G147800 [exp] 335 / 2e-108 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.001G321000 [exp] 324 / 2e-104 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.012G130700 [exp] 308 / 3e-98 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.015G132600 [exp] 303 / 2e-96 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.001G381900 [exp] 291 / 4e-92 AT1G68470 528 / 0.0 Exostosin family protein (.1) Potri.001G382200 [exp] 286 / 5e-90 AT1G68470 530 / 0.0 Exostosin family protein (.1) Potri.001G120800 [exp] 241 / 2e-73 AT4G22580 593 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10000604 pacid=23144303 polypeptide=Lus10000604 locus=Lus10000604.g ID=Lus10000604.BGIv1.0 annot-version=v1.0 ATGGCCATTTCAGTGCCAAGAAGAAAGAACTCTAATAAGGTGGTGTCCAAGAAAACAGAAACAAGCTGCAGAGACCTCTGTTTCTTCCACACAATTCTGG TTAGAGCTCTTTCCAGAATCCCACTTGCCATTTTCCTCTTGATCCTCGTCTACACTTGGTCTTCTTCCACCACAATCATGTCAGGACATCATGTCCTTCA CGTCTGCGTCTCCTCTCGAAAGCTCAACGATCTCTACTGTCTCTCTGCTGGCACCCAACACCCTGCTGGTGCTGGACTCGACGACTTCCCACTTCTTCCC AATGCCTCCATTTCCACCATCCATGGCGATTTAACTAGTCATGTCACTACCAACGGTACGAATAATAATGTAACTACTCCACTCAACATTAATGCTGCAA TCAGAGATACTAGCACTGAGGAAGAAAAAGATCAGGAAACTGAGGAAGCCAATCGAGTGATCGAGCAGCATCTCAGGCTGCATCGATCGTGGTCTTCCAA CGAAACAAGTTGGTCATCATCAACATCATCATGTGACGGGAGAGGGGTTTATGTGTACGATCTTCCAACAAAGTTCAACAAGGACTTGGTTGGTCAATGT GGAGACATGATCCCATGGGTGGCAGATCACTACTTCTGCAACTACTTCGAAAACGGAGGTTTAGGGAAACCGATCGAGAAGCTTGGGAAAGGTTGGTACG ACACTCACCAGTACTCTCTGGAGCCAATCTTCCATTCCAGGATTCTAAGCCATCCTTGCAGGGTCGACAGTCAGAATGAGGCAAAGCTGTTCTATGTACC TTACTATGGTGGACTAGACATACTCAGATGGCACTTCAAGAACGTGTCGAATGATGTGAAGGACACATTGGGATTGGAAGTGATCAAGTGGCTTGAATCC CAAAAGCCATGGAAGCAGAACAATGGTAAAGATCATGTCTTTGTGTTGGGGAAAATCTCATGGGATTTCAGGAGGAGGCCTGATTCAGGTTGGGGGACAA GGTTTCTTCAGCTTGAACAAATGCAAAACCCAACAAAGCTTCTCATTGAGAGACAGCCATGGGATGTTAACGACATCGGTATCCCTCACCCGACATACTT CCATCCACATTCTGATGATGACATACTCGCATGGCAGCTACGTGTCATGCGATCCAAGCGAAAGAGCCTCATTAGCTTTGCTGGAGCTGCCAGGCCTGAT CAGCCTGACAACATCAGGTCAATCTTGATCAAACAATGTGTTGATGCTCCCGAACAGTGCAAGTTTCTGAACTGTAGCGGTGGAGGATGTGATCGACCCG AATCGTTGGTTGAGATGTTCATGGAGTCTGAGTTCTGCCTGCAGCCTCCGGGGGACAGTCCTACGAGGAAATCGGTGTTTGACTCGCTCGTTTCAGGGTG CATTCCGGTGCTGTTCAGTCCATTTACTGCATACTATCAGTATCCCTGGCATCTCCCTGAGGAGCATGAGAAGTACTCGGTGTTTGTGGATGAGGAACAA GTGAGGAAGATGAAAGTGAATGTTGTGGGGAGGCTGATGATGATTCCTGCTAGGCAGAGAGAGGAGATGAGGAGGTTTATAGTGTATGAGTTGTTGCCTG GATTGGTTTATGGAGATTCCAACTCTCAGCTTATCAAGTTTCAGGATTCGTTTGCCATTACTGTGAATAACCTTATAGAGAGGGTCCATAGATTGGAATG A
AA sequence Show only first row Show all	>Lus10000604 pacid=23144303 polypeptide=Lus10000604 locus=Lus10000604.g ID=Lus10000604.BGIv1.0 annot-version=v1.0 MAISVPRRKNSNKVVSKKTETSCRDLCFFHTILVRALSRIPLAIFLLILVYTWSSSTTIMSGHHVLHVCVSSRKLNDLYCLSAGTQHPAGAGLDDFPLLP NASISTIHGDLTSHVTTNGTNNNVTTPLNINAAIRDTSTEEEKDQETEEANRVIEQHLRLHRSWSSNETSWSSSTSSCDGRGVYVYDLPTKFNKDLVGQC GDMIPWVADHYFCNYFENGGLGKPIEKLGKGWYDTHQYSLEPIFHSRILSHPCRVDSQNEAKLFYVPYYGGLDILRWHFKNVSNDVKDTLGLEVIKWLES QKPWKQNNGKDHVFVLGKISWDFRRRPDSGWGTRFLQLEQMQNPTKLLIERQPWDVNDIGIPHPTYFHPHSDDDILAWQLRVMRSKRKSLISFAGAARPD QPDNIRSILIKQCVDAPEQCKFLNCSGGGCDRPESLVEMFMESEFCLQPPGDSPTRKSVFDSLVSGCIPVLFSPFTAYYQYPWHLPEEHEKYSVFVDEEQ VRKMKVNVVGRLMMIPARQREEMRRFIVYELLPGLVYGDSNSQLIKFQDSFAITVNNLIERVHRLE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63450		RHS8	root hair specific 8 (.1)		Lus10000604 [exp]	0	1
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10009837 [exp]	1.7	0.9562
AT1G30870			Peroxidase superfamily protein...		Lus10001228 [exp]	2.4	0.9506
AT1G48930		ATGH9C1	glycosyl hydrolase 9C1 (.1)		Lus10017402 [exp]	2.4	0.9527
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10006711 [exp]	3.5	0.9490
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10013419 [exp]	3.5	0.9337
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10040948 [exp]	4.5	0.9453
AT4G30320			CAP (Cysteine-rich secretory p...		Lus10019993 [exp]	6.6	0.9001
AT1G30870			Peroxidase superfamily protein...		Lus10038393 [exp]	6.7	0.9023
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10004859 [exp]	6.9	0.9114
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10014137 [exp]	6.9	0.8875

Compare expression of checked genes

Lus10000604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.