Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11610 1569 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G57880 1132 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G12970 1129 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT4G00700 1121 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G51570 1096 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G06850 1033 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G61300 1032 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 1010 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 993 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G04150 869 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018839 [exp] 1325 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 1125 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 1125 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 1040 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 1038 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 978 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 848 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10031244 [exp] 780 / 0 AT5G12970 979 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10033097 [exp] 761 / 0 AT1G74720 1566 / 0.0 QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G105400 [exp] 1706 / 0 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.003G125900 [exp] 1675 / 0 AT4G11610 1543 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.014G081700 [exp] 1434 / 0 AT4G11610 1422 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.002G158000 [exp] 1427 / 0 AT4G11610 1400 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 1145 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 1124 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 1099 / 0 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 1095 / 0 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 1088 / 0 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 1065 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0484 [flax] [poplar] Peroxisome PF08372 [flax] [poplar] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Lus10000605 pacid=23144302 polypeptide=Lus10000605 locus=Lus10000605.g ID=Lus10000605.BGIv1.0 annot-version=v1.0 ATGAGCAACCTTAAGCTTGGAGTAGACGTAGTGGGTGCCCACAACCTTATGCCAAAAGATGGGCAAGGTTCATCGAGTGCATTCGTTGAGCTATGCTTCG ACGGACAGAAGTTCCGAACCACTATCAAGGAAAAGGATCTCAATCCTGTTTGGGATGAAAGCTTCTACTTCAACATTTCTGATCCTTCCAACCTTCACTA TCTTACCCTTGATGCCTATGTCTACAACAATGTCAGAGCTACCAATTCCAAATCTTTCCTTGGGAGAGTTTCTGTGAATGGAAACACTTTTGTTCCCTAT TCTGATGCTGTTGTTCTGCATTTCCCTTTGGAAAAGCGCGGCATTTTCTCGCATGTTAAGGGAGAGCTCGGCCTCAAAGTTTACGTCACCGATAATCCAT CGATTAAATCCTCCAGACCTCTTGCTCCGGTCGAATCCTCACATTCGAGTTCGAGTTCGATGCCACAGTCACGGGCAGTTCAGCACCATCGCGGTGAAAG GCACTCGTTTCATCATCTACCAAACTCGAGTCACCACCATCAGCATCATGCACAAACACCTTCTGCTCAAGCAGTGCCGATCACTCATCATGTTCCGAAA TACGTGGCGGACGAGATGAGAGCTGCTGAAACACAACCACAAAAGCTGGTACGTATGCATTCTGCATCTGGAGCACAACCTGTTGACTACGCACTTAAAG AGACCAGTCCTTTCCTGGGAGGTGGGAGGGTTGTTGGTGGACGCGTCATCCATGGCGACAAGACAGCGAGCACTTACGATCTCGTCGAAAGAATGTTCTT TTTGTACGTGAGGGTAGTGAAGGCTCGAGAACTTCCTGCAATGGATGTCACAGGCAGTGTGGATCCATATGTCGAAGTGAGAATCGGGAACTACAGAGGA ATAACAAAGCACTTCAACGACAGGCAGAATCCAGAATGGAACCAGGTGTTTGCCTTCTCGAGGGAACGAATGCAGGCTTCCATGTTGGAAGTGGTTATCA AGGACAAGGATCTCGTAAAGGATGACTTTGTCGGAGTTGTGAGGTTCGACATCAATGAGATCCCTATGAGAGTTCCACCAGACAGTCCTCTTGCTCCAGA GTGGTATCGCCTTGCGGACAAGAAGGGAGAAAAAGTACGAGGCGAGCTGATGCTTGCAGTCTGGATGGGTACGCAAGCTGACGAGGCTTTCTCAGATGCT TGGCATTCTGATGCAGCTACACCGGTAGATAGCAATCCGGCTGCTTCCACCGTTATACGCTCAAAGGTGTATCACGCACCGAGGTTGTGGTACGTGCGAG TGAATGTGGTTGAAGCACAAGACTTGTTTCCGTTGGAGAGAACTAGATTCCTGGATGTTTATGTCAAGGCGCAGATAGGACACCAGGTCCTGAAGACAAG AACCTACCAAGCTCGAACCTTTAACGCCATGTGGAATGAGGATCTTTTGTTTGTTGCAGCTGAGCCCTTTGACGATGATCTGGTCCTTTCAGTTGAGGAT CGTGTCGCCCCCGGAAAAGATGAGATAATCGGAAGGGTTATAATGCCATTGAGCTCAGTGGAGAAGCGGGCTGATGATAGAATCATTCATTCCCGCTGGT TCAACCTTGAGAGACCTGTTGCTGTGGATGTAGATCAGTTGAAGAAAGAAAAGTTTTCTAGTCGTATCCACCTCCGAATCTGTCTAGACGGAGGTTACCA TGTCCTTGATGAATCCACCAACTACAGCAGCGATCTCCGCCCCACGGCAAAGCAACTATGGCGGCCACCAATTGGGTTATTGGAACTTGGAATCCTGAAT GCCGTAGGACTCCATCCCATGAAGACTAGAGATGGCAGGGGGACATCAGATACATTCTGCGTAGCTAAATATGGGCACAAATGGGTACGAACTCGAACCC TCATTGATAACTTGTCCCCCAAGTACAATGAGCAGTACACTTGGGAGGTTTTCGATCCAGCAACAGTTATCACCATTGGCGTATTCGACAATGGTCAGCT GGGCGAAAAGGGATCGAATGGAAAAGACACGAAGATCGGCAAGGTCAGAATTCGAATCTCAACACTCGAAACAGGCCGTGTGTACACACATTCCTACCCT CTACTAGTCCTGCATCCCACTGGACTAAAGAAAATGGGGGAGCTTCACTTGGCAATTAGGTTTACCTGCACATCATTCGCCAACATGCTTTACCAGTACA CTAAACCACTGTTACCCAAAATGCATTACGTTAGGCCCTTTGGGGTTATGCAACTGGACATGCTCCGCCACCAAGCTGTCAACATAGTGGCGTTAAGGCT AGGAAGGGCAGAACCGCCGCTGCGGAAGGAAGTCGTTGAATACATGTCCGACGCTGATTCCCACCTGTGGAGCATGCGGAAGAGCAAAGCCAACTTCTTC CGGCTAATGACGGTCTTCTCCGGTATATTTGCAGCCGGGAAATGGTTCACCGACATATGCAACTGGAAGAACCCAATCACCACAGTCCTCGTTCACGTTC TATTCTTAATGCTGGCGTGCTTCCCGGAGCTCATCCTCCCGACTTGCTTCCTCTACATGTTTCTGATCGGAGTTTGGAATTATCGGTTCCGACCTAGGTA TCCTCCGCATATGAACACGAAAGTCTCGCAGGCAGAGACTGTTCATCCGGACGAGCTTGACGAGGAATTCGACACTTTCCCGACGAGTAGGAACCCTGAT TTGGTGAGAATGAGGTACGATCGGCTGAGGAGCGTGGCTGGGAGGATTCAGACGGTGGTGGGAGATGTGGCGACGCAAGGGGAGCGATGTCAGGCGCTGC TGAGCTGGCGTGACCCGAGAGCCACCGCCGTTTTCATAACGGGTTGCCTTGTGGCAGCGGTGGTTCTATTTGTGACTCCGATTCAGGTGGTTGCTGCTCT GACAGGGTTCTATGTGATGAGGCATCCTAGGTTCCGGCACCGGGTGCCCTCGCTTCCGATTAACTTCTTCCGACGCCTCCCATCTCGCACCGACAGCATG CTGTAA
AA sequence Show only first row Show all	>Lus10000605 pacid=23144302 polypeptide=Lus10000605 locus=Lus10000605.g ID=Lus10000605.BGIv1.0 annot-version=v1.0 MSNLKLGVDVVGAHNLMPKDGQGSSSAFVELCFDGQKFRTTIKEKDLNPVWDESFYFNISDPSNLHYLTLDAYVYNNVRATNSKSFLGRVSVNGNTFVPY SDAVVLHFPLEKRGIFSHVKGELGLKVYVTDNPSIKSSRPLAPVESSHSSSSSMPQSRAVQHHRGERHSFHHLPNSSHHHQHHAQTPSAQAVPITHHVPK YVADEMRAAETQPQKLVRMHSASGAQPVDYALKETSPFLGGGRVVGGRVIHGDKTASTYDLVERMFFLYVRVVKARELPAMDVTGSVDPYVEVRIGNYRG ITKHFNDRQNPEWNQVFAFSRERMQASMLEVVIKDKDLVKDDFVGVVRFDINEIPMRVPPDSPLAPEWYRLADKKGEKVRGELMLAVWMGTQADEAFSDA WHSDAATPVDSNPAASTVIRSKVYHAPRLWYVRVNVVEAQDLFPLERTRFLDVYVKAQIGHQVLKTRTYQARTFNAMWNEDLLFVAAEPFDDDLVLSVED RVAPGKDEIIGRVIMPLSSVEKRADDRIIHSRWFNLERPVAVDVDQLKKEKFSSRIHLRICLDGGYHVLDESTNYSSDLRPTAKQLWRPPIGLLELGILN AVGLHPMKTRDGRGTSDTFCVAKYGHKWVRTRTLIDNLSPKYNEQYTWEVFDPATVITIGVFDNGQLGEKGSNGKDTKIGKVRIRISTLETGRVYTHSYP LLVLHPTGLKKMGELHLAIRFTCTSFANMLYQYTKPLLPKMHYVRPFGVMQLDMLRHQAVNIVALRLGRAEPPLRKEVVEYMSDADSHLWSMRKSKANFF RLMTVFSGIFAAGKWFTDICNWKNPITTVLVHVLFLMLACFPELILPTCFLYMFLIGVWNYRFRPRYPPHMNTKVSQAETVHPDELDEEFDTFPTSRNPD LVRMRYDRLRSVAGRIQTVVGDVATQGERCQALLSWRDPRATAVFITGCLVAAVVLFVTPIQVVAALTGFYVMRHPRFRHRVPSLPINFFRRLPSRTDSM L

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10000605 [exp]	0	1
AT1G08590			Leucine-rich receptor-like pro...		Lus10027951 [exp]	1.0	0.9058
AT3G60480			unknown protein		Lus10000560 [exp]	3.7	0.8176
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10017777 [exp]	4.6	0.7910
AT3G47570			Leucine-rich repeat protein ki...		Lus10033363 [exp]	7.1	0.7466
AT5G66650			Protein of unknown function (D...		Lus10005312 [exp]	7.5	0.7559
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10007287 [exp]	7.9	0.7467
AT4G04980			unknown protein		Lus10036173 [exp]	7.9	0.7664
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10016179 [exp]	8.7	0.7730
AT2G04480			unknown protein		Lus10001750 [exp]	10.1	0.7686
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001841 [exp]	16.4	0.7262

Compare expression of checked genes

Lus10000605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.