Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32790 594 / 0 Exostosin family protein (.1) AT5G25820 579 / 0 Exostosin family protein (.1) AT5G19670 554 / 0 Exostosin family protein (.1) AT5G11610 494 / 2e-169 Exostosin family protein (.1.2) AT4G16745 461 / 1e-156 Exostosin family protein (.1.2) AT5G37000 442 / 4e-149 Exostosin family protein (.1) AT5G03795 329 / 2e-105 Exostosin family protein (.1) AT5G25310 315 / 2e-100 Exostosin family protein (.1) AT3G07620 297 / 7e-94 Exostosin family protein (.1) AT5G11130 283 / 2e-88 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002799 [exp] 1120 / 0 AT5G25820 627 / 0.0 Exostosin family protein (.1) Lus10023927 [exp] 551 / 0 AT5G25820 561 / 0.0 Exostosin family protein (.1) Lus10012973 [exp] 543 / 0 AT5G19670 716 / 0.0 Exostosin family protein (.1) Lus10043239 [exp] 538 / 0 AT5G19670 748 / 0.0 Exostosin family protein (.1) Lus10011121 [exp] 534 / 0 AT5G19670 730 / 0.0 Exostosin family protein (.1) Lus10034951 [exp] 530 / 0 AT5G19670 701 / 0.0 Exostosin family protein (.1) Lus10011120 [exp] 473 / 4e-161 AT4G32790 501 / 1e-172 Exostosin family protein (.1) Lus10043238 [exp] 454 / 4e-154 AT4G32790 493 / 7e-170 Exostosin family protein (.1) Lus10039142 [exp] 333 / 2e-106 AT5G03795 603 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G043700 [exp] 665 / 0 AT5G25820 635 / 0.0 Exostosin family protein (.1) Potri.006G239000 [exp] 637 / 0 AT5G25820 607 / 0.0 Exostosin family protein (.1) Potri.006G238900 [exp] 585 / 0 AT5G19670 592 / 0.0 Exostosin family protein (.1) Potri.018G085400 [exp] 533 / 0 AT5G19670 558 / 0.0 Exostosin family protein (.1) Potri.018G085500 [exp] 525 / 1e-179 AT5G19670 693 / 0.0 Exostosin family protein (.1) Potri.003G079000 [exp] 479 / 8e-164 AT4G16745 636 / 0.0 Exostosin family protein (.1.2) Potri.014G171100 [exp] 332 / 1e-106 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.006G118000 [exp] 330 / 4e-106 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.014G170900 [exp] 315 / 2e-100 AT3G07620 572 / 0.0 Exostosin family protein (.1) Potri.018G025400 [exp] 310 / 2e-98 AT5G25310 518 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10000608 pacid=23175334 polypeptide=Lus10000608 locus=Lus10000608.g ID=Lus10000608.BGIv1.0 annot-version=v1.0 ATGGGAAAAGAAATTGGGCTGCGGTGCCCAGGGGAGAGCTGGAAACTGATATCCCTTATCGGCATTACTTTTGTTCTGGCTGTAACATTCCAGTATATTG AACTTCCCTACGCAACTTTTTGGCCTTCTACTACGTCTTCTTCTGCTAGTAAGGCTATTGTGGATCCAGAGGCCAAAGGCTTCAACGACTCTTTTCCATT TGTTCTTGAGAATAGCAGCAACTCCTCTAATGTCGAGGCGGCTGCTCGAGATGAGGCAGCTGATGATGATGATCCGGAAGATAGGACTGAAAATCTGGGT AAAGACTTTGTAACTGAAGGAGTCAACAAGTCTTCTGGCTCTTCTGATCAAGAGTTGCTTCTCACAAATAATGCCAACTCAACTTTGGTTCCCAAGAATA GTTCGGCGGATAATGCATCTCATGTTTCCTTTGCACCCGAAACTGAAGGGCCTTCAGTTGTTTCGCCACCTAAGGAGTCATCCAACAACATCAGTAGTAC TATCCCAAAGATTGCAGAGGCCAACGCTCCAAATCCTGCTGCATCTGTTGATTCCATGAAACCAGCAAATACAAACCAGGACATCAATAATGCCAAGTCA GACAAACTGAAAACAGACATTAGCAATGCAGATGATATTCCTTCTCCTAAAAAAGCTGCAGATAAGAGAAGGAAGCCTACCGATACTACAACAACACCAG CAGTGTTAACTATCTCGGAGATGAACAGATTGATGCTTCAGAGTTGGACCGCTCCAAATGTGATCAAACCACGATGGCCTTCTGCTGCTGACCAACAGCT GCGCCATGCGAGATCAGAAATAGAACATGCGCCGGTTACAGCAAACGATCCAATGCTTTATGCTCCTATCTACCGCAATGTATCAATGTTCAAGAGGAGT TACGAATTGATGGAAAACATGCTGAAAGTGTACGTTTATAGAGAAGGGGAAAGGCCAGTATTCCATCAGCCAGCACTGAGAGGGATCTATGCCTCTGAAG GATGGTTCATGAGACAGATGGAAAGCTACAAGAAATTCGTAACAAGAGACTCCAGGAAAGCTCATCTATTTTACTTACCTTTTGGTTCTCGCAATCTGGA AGAAGCGCTGTACGTGCCGAATTCACACAGTCATAAAAACCTCATACAGTATCTCAAGGACTACTTGGACATGGTCTCAGCAAAACATCCTTTCTGGAAT AGAACAGACGGTGCTGACCATTTTCTCGTCGCATGCCATGATTGGGCACCAGCTGAAACAAGACAATACATGTCGAATTGCATAAGAGCACTCTGCAATG CTGACGTTAAAGAAGGTTTCGTCTTTGGGAAAGACTCATCCCTTCCGGAGACTAACGTACGGAATCCTCAGAAGCCTTTGAGAGACATTGGAGGGAAATC TGCTTCCAAGAGGTCAATCCTTGCCTTTTACGCCGGAAACATGCACGGCTATGTCAGGCCGATTCTGTTACAACACTGGCAGAACAAAGACCCTGATATT AAAGTATATGGGGTGATGCCAAAATCTAAAGGCAACAAGAACTACATCCAGCACATGAGGAGCAGCAAGTACTGCATCTGCCCCAAAGGGTACGAAGTCA ACAGCCCTCGTGTCGTTGAGGCCATCTTTCACGAGTGTGTTCCCGTGATCATCTCGGACAATTTCGTGCCGCCATTTTTCGAGGTGCTGAATTGGGAGTC ATTTGCGGTGTTTGTGCTGGAGAAGGACATCCCTAATCTGAAGAACATTCTACTATCCATCTCACAGAGGAGGTACCAGCAAATGCAGATGAGAGTGAAA AGGGTTCAACAGCATTTTCTGTGGCATCCTAAACCTGTCAAGTACGATGTATTTCACATGATACTTCACTCCATCTGGTATAACAGAGTGTTCCGGACAT GA
AA sequence Show only first row Show all	>Lus10000608 pacid=23175334 polypeptide=Lus10000608 locus=Lus10000608.g ID=Lus10000608.BGIv1.0 annot-version=v1.0 MGKEIGLRCPGESWKLISLIGITFVLAVTFQYIELPYATFWPSTTSSSASKAIVDPEAKGFNDSFPFVLENSSNSSNVEAAARDEAADDDDPEDRTENLG KDFVTEGVNKSSGSSDQELLLTNNANSTLVPKNSSADNASHVSFAPETEGPSVVSPPKESSNNISSTIPKIAEANAPNPAASVDSMKPANTNQDINNAKS DKLKTDISNADDIPSPKKAADKRRKPTDTTTTPAVLTISEMNRLMLQSWTAPNVIKPRWPSAADQQLRHARSEIEHAPVTANDPMLYAPIYRNVSMFKRS YELMENMLKVYVYREGERPVFHQPALRGIYASEGWFMRQMESYKKFVTRDSRKAHLFYLPFGSRNLEEALYVPNSHSHKNLIQYLKDYLDMVSAKHPFWN RTDGADHFLVACHDWAPAETRQYMSNCIRALCNADVKEGFVFGKDSSLPETNVRNPQKPLRDIGGKSASKRSILAFYAGNMHGYVRPILLQHWQNKDPDI KVYGVMPKSKGNKNYIQHMRSSKYCICPKGYEVNSPRVVEAIFHECVPVIISDNFVPPFFEVLNWESFAVFVLEKDIPNLKNILLSISQRRYQQMQMRVK RVQQHFLWHPKPVKYDVFHMILHSIWYNRVFRT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32790			Exostosin family protein (.1)		Lus10000608 [exp]	0	1
					Lus10005523 [exp]	1.0	0.8747
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10003196 [exp]	3.5	0.8211
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10039344 [exp]	3.5	0.8419
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Lus10040662 [exp]	3.5	0.8282
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013383 [exp]	4.5	0.8266
					Lus10039654 [exp]	6.2	0.7926
AT5G17680			disease resistance protein (TI...		Lus10010223 [exp]	7.9	0.8109
AT1G02810			Plant invertase/pectin methyle...		Lus10013416 [exp]	8.2	0.7709
AT1G13340			Regulator of Vps4 activity in ...		Lus10034303 [exp]	10.2	0.7817
					Lus10023285 [exp]	12.7	0.7843

Compare expression of checked genes

Lus10000608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.