Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31280 483 / 1e-161 bHLH bHLH155 ,CPuORF7 conserved peptide upstream open reading frame 7 (.1.2.3.4) AT1G06150 466 / 2e-154 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G27230 203 / 2e-56 bHLH LHW, bHLH156 LONESOME HIGHWAY, transcription factor-related (.1.2) AT1G64625 188 / 6e-52 bHLH bHLH157 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) AT5G53900 68 / 6e-12 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT3G15240 63 / 3e-10 Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT1G60060 52 / 9e-07 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) AT5G43175 51 / 9e-07 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G37800 50 / 4e-06 bHLH ATRSL1, bHLH086 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) AT2G16910 47 / 6e-05 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033880 [exp] 1387 / 0 AT2G31280 481 / 7e-160 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10003569 [exp] 242 / 1e-76 AT2G31280 120 / 1e-32 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10013348 [exp] 242 / 7e-69 AT2G27230 355 / 6e-112 LONESOME HIGHWAY, transcription factor-related (.1.2) Lus10001527 [exp] 186 / 8e-50 AT1G64625 216 / 5e-62 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) Lus10033222 [exp] 184 / 4e-49 AT1G64625 211 / 2e-60 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) Lus10010877 [exp] 132 / 1e-31 AT2G29150 191 / 2e-55 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041936 [exp] 58 / 1e-08 AT5G53900 419 / 7e-146 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Lus10024800 [exp] 50 / 3e-06 AT1G60060 221 / 8e-70 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10012986 [exp] 49 / 7e-06 AT1G60060 428 / 8e-150 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G222500 [exp] 749 / 0 AT2G31280 568 / 0.0 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.002G040600 [exp] 730 / 0 AT2G31280 437 / 7e-144 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.009G017700 [exp] 242 / 2e-68 AT2G27230 355 / 2e-110 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.001G216900 [exp] 237 / 2e-66 AT2G27230 363 / 3e-113 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.003G144900 [exp] 210 / 1e-57 AT2G27230 233 / 2e-66 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.006G090000 [exp] 207 / 4e-57 AT1G06150 195 / 6e-53 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G086000 [exp] 197 / 2e-53 AT2G27230 248 / 7e-72 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.011G116400 [exp] 64 / 2e-10 AT5G53900 438 / 3e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.001G397800 [exp] 62 / 7e-10 AT5G53900 439 / 1e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.014G024000 [exp] 58 / 1e-08 AT1G60060 243 / 4e-77 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000609 pacid=23144929 polypeptide=Lus10000609 locus=Lus10000609.g ID=Lus10000609.BGIv1.0 annot-version=v1.0 ATGGGGACTGACTTGCATCAGACGCTTAAGAGCCTCTGCTTTAACACTGAGTGGAAATATGCAGTTTTGTGGAAGCTCAAACATCGTTCGCGCATGGTGT TAACATGCGAAGATTCCTACTACGATAATTTCCAGCAATGTGATCCTCTGGAGAACGAATGCTCCAGTGAGAAGCCTGAAAACTTGCGTGGCATTTGCAA TCCGTGTGACCTCCTTGGATTAGCGGTTGCAAAGATGTCATACCACGTATACTCATTGGGAGAAGGGATTGTTGGACAGGTAGCTGTTAGTGGGAAGTAT CAATGGATTTTTGCTGACAACCATGCATCCAATTCTTCATCATTTGAGTTTTCAGATGGCTGGCAAACTCAGTTTATGGCTGGAATCAAGGTTGTTGAGG ATGTCAGGCTGGTGACACATATTAAGGATGCCTTTTTAGGTCTTCAACATTCGTCCGTTCTGCACCCCTCTGCTACTTCTGAACATATTATCAAGAGTTC TCTTTGTGCGGATTTCTCACCAAAAACTTTGGTTCCAAGTGTTCTTGATAGCGCGTGCAATCCATACAAAGTGGCTAACACTGGGGCGTCAGATAACTTG TGTTTCTCATTTCCTCATCTACAAAAAACTAAGGATAAATCTGTTCACCCTTATGTACTGCCGGGGCTCCACGAGAGTGCAGAAAAAGTGGTCAATAAAA TTGAGATGCAGGAATCTTCAGCATCTTGGACTGATGAAAATGCCACAATGGTTCAGCTGAGAGGAACAACATCTTCTGAGAATCAAAATCAAACAGGGAT TGATATGGCTAAGACCGAGGTGTATGGAACTGATGCTAGTGCCTGGAATGGTATAACTGGTGTGCCACAACAATCTGCAACGCCACATTCGGATGTTGGC CCTATAAATTTGAAGGATACTTCAATTCCTAATGACAAAGTTGGACAATGTCTTACCAATTTTGCTACAAATCGCGTTGACTCTAATTTTCGTAGTAAAG CCAAGTCTGATGGCATGTGTTCGTTTCAGAATATGGAGCTGAATGTTCCAGTGACATCAGGATTTGACGTTGTTGATAATTTCAGTCCATTGAAGTATCA AAGTGAGTCAGCCCAGTTGAAATCATCCAACATACCTTTCAACTTCTCTGCCGGTAGTGAATTGCACGAGGTTCTCGGACCAGATTATTTGAGGAGCTGC ATGTATATCAATTCAGCTCCTCATTTGGAGAAGATTGAAAGTGAAACAGTTCTGAATGTACCTGGTGAGATGAGTTGTAGCCAGATGACACGTGGCACGA GTTCAGATAATCTTCTAGAAGCAGTAGTTGGGAACCTCTGCAGCAGCGTCAGTGAAGTTAGAAGTGACAAATCAGTATGCCAATCACTGCAGTCTTTGTT GACAACAGACAGTATGCCTGATCCTTCTTCCCAGACAAAGCATATTACAAGTTCAAGCTGTGCGCTTAATGGCAGTGCTATTGTTGAAGATACACAAAAT TGTTCAAATTCAACTGGGGTTTACGATGGGATGTCTTCCAAAGGGTGTTCGTCCAGTTATCTAAGTACTTGCAGTGAACAGTTGGACAGGCATTCAGAAC CAGGAAAGAGCAACAAAAGGAGGGCTAAGCCTGGTGAGGGGTGTAGACCCCGGCCAAGAGATAGACAACTGATTCAAGATCGTATTAAGGAGCTGAGAGA ACTTGTGCCAAATGGCTCTAAGTGCAGTATTGATTCATTGCTAGAACGTACAATAAAGCACATGGTATTTCTTGAAAGCATCACAAAACATGCAGACAAG CTCAACAAGTGTGCAGAATCAAAGTTGCACAAGAAAGGAACAGATTCCTCCAATTTTGAACAAGGATCAAGCTGGGCAGTCGAGGTTGGAGGCCATCTCA AAGTTTCTTCAATAATAGTTGAGAATATAAACAAAAATGGGCAAATGCTAGTGGAGATGTTATGCGAGGAATGCAGTCACTTCCTTGAGATAGCTGAAGC CATCAGGAGCTTAGGTTTGACAATATTAAAAGGAATCACAGAAGGGCACGGTGAGAAGACGTGGATATGCTTTGTTGTTGAGGGACAGAACAATAGAACG ATGCACAGGATGGATGTTTTGTGGTCTCTGGTGCAATTGTTGCAGCCCAAGGGCATGAATCAATAG
AA sequence Show only first row Show all	>Lus10000609 pacid=23144929 polypeptide=Lus10000609 locus=Lus10000609.g ID=Lus10000609.BGIv1.0 annot-version=v1.0 MGTDLHQTLKSLCFNTEWKYAVLWKLKHRSRMVLTCEDSYYDNFQQCDPLENECSSEKPENLRGICNPCDLLGLAVAKMSYHVYSLGEGIVGQVAVSGKY QWIFADNHASNSSSFEFSDGWQTQFMAGIKVVEDVRLVTHIKDAFLGLQHSSVLHPSATSEHIIKSSLCADFSPKTLVPSVLDSACNPYKVANTGASDNL CFSFPHLQKTKDKSVHPYVLPGLHESAEKVVNKIEMQESSASWTDENATMVQLRGTTSSENQNQTGIDMAKTEVYGTDASAWNGITGVPQQSATPHSDVG PINLKDTSIPNDKVGQCLTNFATNRVDSNFRSKAKSDGMCSFQNMELNVPVTSGFDVVDNFSPLKYQSESAQLKSSNIPFNFSAGSELHEVLGPDYLRSC MYINSAPHLEKIESETVLNVPGEMSCSQMTRGTSSDNLLEAVVGNLCSSVSEVRSDKSVCQSLQSLLTTDSMPDPSSQTKHITSSSCALNGSAIVEDTQN CSNSTGVYDGMSSKGCSSSYLSTCSEQLDRHSEPGKSNKRRAKPGEGCRPRPRDRQLIQDRIKELRELVPNGSKCSIDSLLERTIKHMVFLESITKHADK LNKCAESKLHKKGTDSSNFEQGSSWAVEVGGHLKVSSIIVENINKNGQMLVEMLCEECSHFLEIAEAIRSLGLTILKGITEGHGEKTWICFVVEGQNNRT MHRMDVLWSLVQLLQPKGMNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Lus10000609 [exp]	0	1
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Lus10033880 [exp]	1.0	0.8946
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10034021 [exp]	5.3	0.8225
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10023909 [exp]	5.7	0.8138
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Lus10003569 [exp]	5.7	0.7946
AT1G08930		ERD6	EARLY RESPONSE TO DEHYDRATION ...		Lus10033812 [exp]	9.4	0.7728
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10032660 [exp]	13.5	0.7671
AT2G16980			Major facilitator superfamily ...		Lus10004157 [exp]	15.7	0.7729
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10004434 [exp]	18.7	0.7639
AT2G43120			RmlC-like cupins superfamily p...		Lus10019561 [exp]	19.1	0.7909
AT5G65760			Serine carboxypeptidase S28 fa...		Lus10039645 [exp]	31.3	0.7567

Compare expression of checked genes

Lus10000609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.