Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 235 / 3e-73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 231 / 1e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G59530 228 / 2e-70 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04350 228 / 2e-70 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43440 226 / 1e-69 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G03410 226 / 2e-69 2A6 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 224 / 4e-69 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G30830 223 / 1e-68 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43450 223 / 2e-68 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06640 223 / 3e-68 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033877 [exp] 352 / 5e-120 AT1G06620 223 / 2e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000612 [exp] 312 / 6e-103 AT5G59540 337 / 2e-114 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10033879 [exp] 305 / 4e-100 AT5G59540 312 / 8e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10033878 [exp] 309 / 5e-99 AT5G59540 308 / 4e-100 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10037796 [exp] 249 / 9e-79 AT1G06620 442 / 4e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017080 [exp] 249 / 9e-79 AT1G06620 440 / 3e-155 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027586 [exp] 238 / 5e-74 AT1G06620 449 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022193 [exp] 235 / 5e-73 AT1G06620 455 / 1e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10002892 [exp] 235 / 5e-73 AT1G06620 381 / 1e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G222300 [exp] 294 / 6e-96 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G136000 [exp] 293 / 1e-95 AT1G06620 314 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 288 / 2e-93 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 283 / 2e-91 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 247 / 9e-78 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.004G083100 [exp] 242 / 7e-76 AT1G04350 287 / 5e-95 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 232 / 4e-72 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 231 / 2e-71 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073232 [exp] 226 / 1e-69 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.013G045000 [exp] 224 / 5e-69 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10000611 pacid=23144931 polypeptide=Lus10000611 locus=Lus10000611.g ID=Lus10000611.BGIv1.0 annot-version=v1.0 ATGATAGACTTATCGCCTGGAAACCCGGAGGTGGTGGGGCAGATCCGGAAAGCAGCGGAGACATGGGGATTCTTTCAGATAGTCAACCACGGGATGGCGG CGGAGGTCATGGAAAAGATGCTGACGGCGACTCGGAGATTCCACGAGCTGCCCAGTGAGGAGAAGATGGAGTTGTACTCACGTGACGCCGCGTTGGACGT AAGGTACATAAGTAACGGCCTGCTGCTGACGCGGATTGCGCCGGCAGATTGGAGGGACACGCTGGCAGTCAACGCTCCTGATGGTCATTTCTGCCCTGAG TTTTGTCCTCCTGTATGCAGGGAAGCTTTAACCGAGTACTTAACCCAAATAATCAAACTAAAGAACAAGTTATCAGAACTACTTTCAAAAGCAGCAGGTC TAAGCCAAGACTACTTATCAACCCTAAATTGCATGGAATCAATCGCAATGGCGTGCCATTACTACCCAGCATGCCCACAACCTGACCTAACCCTAGGAGC CTACAAGCATACCGACCCGTACTTCCTCACCATAGTCCTCCAAGACGGCGCAGGCGGACTCCAGGTCCTGCACCGGGGTCGATGGGTCGATGTGCCGACA CCACGTGGAGCCTTGGTGGTGAACATTGGAGACTTCTTGCAGCTGATCACCAACGACATGTTCAAGAGCGTGGAGCACCGGGTCAAAGTATGGAGCTCCG TGGCCCGTTGTTCAGTTGTTAGCTTCTTCTTACCCGGTTCGGTGAACATGATGAAACCGTATAGTCCGGCGAAGGAGCTTCTGTCTGAGGAGAATCCGGC GGTGAAAGCTGTAACCGATTACTTGAAACAAGTAACAACACTAAATAAGAAGCTATCAGAGCTACTTTCACAAGCTGCAGGGTTAAGTCGGGACTGCTTA TCAACCATCAAATGCATGGAATCAATAGCAATGGTGTGTCATTACTACCCGGCTTGTCCCCAGCCCGACCTAACCCTAGGCGTCTCCAAGCACACCGATC CATATTTGCTCACCATACTCCTTCAAGACTCCACAGGAGGACTCCAAGTCCTTGACCCCAACAACGACCGACGGGTCGACGTGCCTGTCACGCTCGGGAC CCTGGTGGTGAACATTGGGGATTTCATGCAGCTCATCACCAACGACAAGTTCAAGAGCGTTGAACATCCGGTCAAAGCTTGGAGCTCCAAGACCCGTTCT TCTGTTGCTTGCTTCTTCTCACCGGGCTCCGAGAACGTTTCGAAACCTTACAGTCCTGCCGAGGAGATTATCTCGTCTAAGGAGAATCCACCGGTTTATA GAGTCACTCATGTCGCTGAATTTATGAAATGTTTTAGGTTACATGGCTCCGCACTTTCTCACTTCAGATTGTGCCCGCCTGAGTCCGGAGTATCCAACTT TATCGTTCACGTAACGTCGTAA
AA sequence Show only first row Show all	>Lus10000611 pacid=23144931 polypeptide=Lus10000611 locus=Lus10000611.g ID=Lus10000611.BGIv1.0 annot-version=v1.0 MIDLSPGNPEVVGQIRKAAETWGFFQIVNHGMAAEVMEKMLTATRRFHELPSEEKMELYSRDAALDVRYISNGLLLTRIAPADWRDTLAVNAPDGHFCPE FCPPVCREALTEYLTQIIKLKNKLSELLSKAAGLSQDYLSTLNCMESIAMACHYYPACPQPDLTLGAYKHTDPYFLTIVLQDGAGGLQVLHRGRWVDVPT PRGALVVNIGDFLQLITNDMFKSVEHRVKVWSSVARCSVVSFFLPGSVNMMKPYSPAKELLSEENPAVKAVTDYLKQVTTLNKKLSELLSQAAGLSRDCL STIKCMESIAMVCHYYPACPQPDLTLGVSKHTDPYLLTILLQDSTGGLQVLDPNNDRRVDVPVTLGTLVVNIGDFMQLITNDKFKSVEHPVKAWSSKTRS SVACFFSPGSENVSKPYSPAEEIISSKENPPVYRVTHVAEFMKCFRLHGSALSHFRLCPPESGVSNFIVHVTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000611 [exp]	0	1
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10034467 [exp]	1.0	0.9794
AT2G36950			Heavy metal transport/detoxifi...		Lus10022617 [exp]	1.4	0.9770
AT3G51000			alpha/beta-Hydrolases superfam...		Lus10028340 [exp]	2.2	0.9658
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10016461 [exp]	2.6	0.9629
AT5G67400		RHS19	root hair specific 19 (.1)		Lus10035204 [exp]	2.8	0.9667
AT3G51440			Calcium-dependent phosphotries...		Lus10041827 [exp]	3.9	0.9673
AT2G14095			unknown protein		Lus10001299 [exp]	4.0	0.9568
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Lus10023822 [exp]	5.2	0.9596
AT5G18350			Disease resistance protein (TI...		Lus10018024 [exp]	5.7	0.9452
					Lus10026056 [exp]	7.5	0.9571

Compare expression of checked genes

Lus10000611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.