Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59540 337 / 3e-114 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G59530 333 / 5e-113 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04350 330 / 8e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06620 323 / 7e-109 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30830 313 / 3e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43440 304 / 2e-101 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G04380 300 / 5e-100 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30840 299 / 1e-99 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43450 298 / 3e-99 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G03400 296 / 2e-98 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033879 [exp] 580 / 0 AT5G59540 312 / 8e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10033878 [exp] 559 / 0 AT5G59540 308 / 4e-100 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10000611 [exp] 331 / 2e-110 AT1G06620 250 / 7e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022196 [exp] 327 / 3e-110 AT5G59530 420 / 5e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022195 [exp] 326 / 5e-110 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 325 / 3e-109 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 321 / 5e-108 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027586 [exp] 321 / 5e-108 AT1G06620 449 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021203 [exp] 320 / 9e-108 AT1G06620 416 / 2e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G222300 [exp] 457 / 2e-161 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 420 / 6e-147 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 412 / 1e-143 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G136000 [exp] 386 / 1e-133 AT1G06620 314 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.004G083100 [exp] 363 / 1e-124 AT1G04350 287 / 5e-95 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 336 / 7e-114 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G073166 [exp] 334 / 3e-113 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 330 / 1e-111 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G073300 [exp] 330 / 2e-111 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G165400 [exp] 329 / 4e-111 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10000612 pacid=23144933 polypeptide=Lus10000612 locus=Lus10000612.g ID=Lus10000612.BGIv1.0 annot-version=v1.0 ATGGAACTTCCTCTCGCAACCACAACCTACGACGTCGTTTACGACAAAACGAAGGACGTAAAAGCATTCGACGGAACAAAAGCTGGTGTTAAAGGACTAG TGGACTCTGGCATCACCACAATCCCTAGGTTCTTCATCCACCACGGCCTATCGAGTTGGCCAATCTCAGCTGCCTCGTCAGACCTCCTGCCTCCCGTGAT AGACATGTCGAGAGGGCGAGAGGCGGTGGTCGGAGAGATTCGAGTGGCAGCAGAGACATGGGGTCTGTTCCAACTGGTCAACCATGGCATCCCCACAAGT GTGATGGAGGAAATGCTGGCTGCCGTGAGTCGATTCCACGAGCAACCAACGGAGTCGAAAGCGGAGATGTACTCTCGCGATGGCCGGAAAAAGGTTAGGT ACTTCAGCAATGGAGATTTGCTAGTGAGCAAGTCACCTGCAAATTGGAGGGATACACTGGCATTTTATTTCCAGGATGGTCATCTTGACCCTCAACTCTT CCCTCAAGTTTGCAGAGAAGCAGTGGAGGCGTACGTGCAAAATGTGATCAAACTAAGAAAACAGTTGTCGGAACTGGTATCTGAAGCTGCGGGGCTCCCT AAAGAGTACCTGTCGAGCATCGGGTGCATGGAAACAGTGTCGTTTCTGTGCCACTATTACCCGCGTTGCCCTCAGCCGCACCTAACTCTCGGCGCCACAA ACCATATGGACCCTTCCTTCCTCACCATTCTGTTGCAGGACCAAAGAGGCGGGCTTCAGGTTTTGCATCAGGATCAGTGGGTCAATGTCACCCCTCTTCC GGGAGCTCTTATAGTCAACGTCGGAGATTTCATGCAGCTGATTACAAATGACAAGTTCAAAAGCGCAGAACATAGAGTCGTGGTTGGAGATGAGAAAGGC GGGAATAGGGCATCTGTGGCAAGCCTTTTCTATCCAAGCTCTTCCAATAATCTCAAACCATATGGGCCTCCCAATGAGCTTCTTTCTCATCGAAGCCCGC CAATTTACAGAGATACTCATTTCACTGAATTTATGGAACATTTTAGGTCTAAAGGATTGGATGGCAAACCTACGCTCTCTCATTTCAGACGTTCATAA
AA sequence Show only first row Show all	>Lus10000612 pacid=23144933 polypeptide=Lus10000612 locus=Lus10000612.g ID=Lus10000612.BGIv1.0 annot-version=v1.0 MELPLATTTYDVVYDKTKDVKAFDGTKAGVKGLVDSGITTIPRFFIHHGLSSWPISAASSDLLPPVIDMSRGREAVVGEIRVAAETWGLFQLVNHGIPTS VMEEMLAAVSRFHEQPTESKAEMYSRDGRKKVRYFSNGDLLVSKSPANWRDTLAFYFQDGHLDPQLFPQVCREAVEAYVQNVIKLRKQLSELVSEAAGLP KEYLSSIGCMETVSFLCHYYPRCPQPHLTLGATNHMDPSFLTILLQDQRGGLQVLHQDQWVNVTPLPGALIVNVGDFMQLITNDKFKSAEHRVVVGDEKG GNRASVASLFYPSSSNNLKPYGPPNELLSHRSPPIYRDTHFTEFMEHFRSKGLDGKPTLSHFRRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59540			2-oxoglutarate (2OG) and Fe(II...		Lus10000612 [exp]	0	1
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10007404 [exp]	4.4	0.7837
AT5G44265			Bifunctional inhibitor/lipid-t...		Lus10033667 [exp]	6.0	0.7481
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013925 [exp]	8.3	0.7528
AT5G48850		ATSDI1	SULPHUR DEFICIENCY-INDUCED 1, ...		Lus10011872 [exp]	10.5	0.7581
AT2G21400		SRS3	SHI-related sequence3 (.1)		Lus10017492 [exp]	19.0	0.7474
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10033172 [exp]	21.7	0.7354
					Lus10016931 [exp]	21.7	0.7306
AT5G44960			F-box/RNI-like/FBD-like domain...		Lus10015246 [exp]	26.0	0.7272
AT4G08250	GRAS		GRAS family transcription fact...		Lus10020857 [exp]	27.1	0.7245
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10006160 [exp]	27.8	0.7027

Compare expression of checked genes

Lus10000612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.