Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15510 308 / 7e-106 Photosystem II reaction center PsbP family protein (.1.2.3) AT2G39470 51 / 1e-07 PnsL1, PPL2 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) AT3G55330 51 / 2e-07 PPL1 PsbP-like protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000352 [exp] 483 / 3e-175 AT4G15510 309 / 4e-106 Photosystem II reaction center PsbP family protein (.1.2.3) Lus10030326 [exp] 56 / 4e-09 AT3G55330 268 / 7e-91 PsbP-like protein 1 (.1) Lus10003289 [exp] 55 / 8e-09 AT3G55330 267 / 7e-91 PsbP-like protein 1 (.1) Lus10040314 [exp] 52 / 1e-07 AT2G39470 254 / 5e-86 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) Lus10023436 [exp] 51 / 2e-07 AT2G39470 255 / 3e-86 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G010700 [exp] 343 / 7e-120 AT4G15510 319 / 4e-110 Photosystem II reaction center PsbP family protein (.1.2.3) Potri.013G006500 [exp] 340 / 9e-119 AT4G15510 306 / 5e-105 Photosystem II reaction center PsbP family protein (.1.2.3) Potri.010G210200 [exp] 59 / 3e-10 AT3G55330 299 / 2e-103 PsbP-like protein 1 (.1) Potri.010G210000 [exp] 43 / 0.0001 AT2G39470 278 / 3e-95 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [flax] [poplar] Mog1p_PsbP PF01789 [flax] [poplar] PsbP PsbP
Representative CDS sequence Show only first row Show all	>Lus10000614 pacid=23140448 polypeptide=Lus10000614 locus=Lus10000614.g ID=Lus10000614.BGIv1.0 annot-version=v1.0 ATGGCGACGCTAGTCTCTTCCTCCTTTCATCTTCCTCCTCCGACATTCCATCTTCCATCACAAAATCATGGTCCCCATTCGTCCATCGTCTCCGCTTCTA AGCACCATCTCTACCAGACTAAAGCTTTTGCAGTTCCGAGGAGAGACGCCTTGTCCTTCATCCTCCTCTCCACCGCTACTTCATTCTTACCTGAATCAAC TCACCCTGCATTTGCCCTGCCATCTGCTGTTTCCTTCAGGGAATACATCGACACCTTTGACGGTTACTCCTTCAATTATCCTACCAATTGGATTCAGGTC CGCGGAGCTGGGGCAGATATCTTCTTCAGGGACCCTTACATTCTCGACGAAAACATCTCCGTCGAGTTCTCCTCCCCATCGTCCTCCAGGTATAAAAGCG TCGAGGAGTTAGGATCGCCACAAGACGCCGGAGCCAAGGTGCTCAAACAGTACCTTACCGAGTTCATGTCCACAAGACTTGGAGTCCGTCGAGAAGCCAA TATTCTTACCACTTCGTCTAGAGTTGCTGAAGATGGAAAACTGTATTACCAAGTTGAGGTGAACATCAAGTCCTTCGCCAGCAACAATGAGCTTGCAGTT ATGCCACAAGACAGAGTGGTCCGTCTTGAATGGGATCGGCGTTACCTCTCCGTTCTTGGAGTCGATAACAACCGTCTTTATGAGTTGAGACTGCAGACTC CGGAGAGTGTGTTTGTGGAAGAAGAGAATGATCTCCGCCAAGTAATGAATTCTTTCAGAGTTAATAGAATCTCCGCATAA
AA sequence Show only first row Show all	>Lus10000614 pacid=23140448 polypeptide=Lus10000614 locus=Lus10000614.g ID=Lus10000614.BGIv1.0 annot-version=v1.0 MATLVSSSFHLPPPTFHLPSQNHGPHSSIVSASKHHLYQTKAFAVPRRDALSFILLSTATSFLPESTHPAFALPSAVSFREYIDTFDGYSFNYPTNWIQV RGAGADIFFRDPYILDENISVEFSSPSSSRYKSVEELGSPQDAGAKVLKQYLTEFMSTRLGVRREANILTTSSRVAEDGKLYYQVEVNIKSFASNNELAV MPQDRVVRLEWDRRYLSVLGVDNNRLYELRLQTPESVFVEEENDLRQVMNSFRVNRISA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15510			Photosystem II reaction center...		Lus10000614 [exp]	0	1
AT4G15510			Photosystem II reaction center...		Lus10000352 [exp]	1.0	0.9678
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Lus10035171 [exp]	2.4	0.9569
AT2G38025			Cysteine proteinases superfami...		Lus10027758 [exp]	2.6	0.9414
AT5G27390			Mog1/PsbP/DUF1795-like photosy...		Lus10015165 [exp]	2.8	0.9488
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10024430 [exp]	3.5	0.9492
AT2G35500		SKL2	shikimate kinase-like 2, shiki...		Lus10030990 [exp]	4.2	0.9430
AT4G30845			unknown protein		Lus10026098 [exp]	4.2	0.9398
AT1G49975			unknown protein		Lus10033771 [exp]	5.0	0.9449
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Lus10042758 [exp]	7.3	0.9291
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Lus10032000 [exp]	8.5	0.9248

Compare expression of checked genes

Lus10000614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.