Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16890 287 / 3e-95 UBC36 ,UBC13B UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) AT1G78870 285 / 3e-94 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) AT1G09320 231 / 8e-69 agenet domain-containing protein (.1) AT5G41700 147 / 6e-42 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT3G08690 147 / 9e-42 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT1G64230 147 / 1e-41 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G53300 146 / 2e-41 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT4G27960 145 / 3e-41 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT2G16740 144 / 2e-40 UBC29 ubiquitin-conjugating enzyme 29 (.1) AT5G56150 142 / 1e-39 UBC30 ubiquitin-conjugating enzyme 30 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000353 [exp] 635 / 0 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10017654 [exp] 290 / 3e-96 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10033611 [exp] 290 / 3e-96 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10010903 [exp] 179 / 2e-50 AT1G09320 136 / 3e-35 agenet domain-containing protein (.1) Lus10037805 [exp] 175 / 2e-48 AT3G06520 271 / 9e-86 agenet domain-containing protein (.1) Lus10031429 [exp] 172 / 6e-48 AT1G09320 131 / 2e-33 agenet domain-containing protein (.1) Lus10017088 [exp] 173 / 1e-47 AT3G06520 283 / 1e-90 agenet domain-containing protein (.1) Lus10021385 [exp] 145 / 4e-41 AT1G64230 302 / 1e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10039323 [exp] 145 / 6e-41 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G011100 [exp] 305 / 1e-99 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.013G006900 [exp] 303 / 2e-98 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.011G111400 [exp] 285 / 2e-94 AT1G78870 311 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) Potri.001G392500 [exp] 283 / 9e-94 AT1G78870 310 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) Potri.016G138900 [exp] 147 / 1e-41 AT1G64230 304 / 3e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.019G131400 [exp] 147 / 1e-41 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.003G136200 [exp] 145 / 3e-41 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.006G110200 [exp] 145 / 4e-41 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.011G168200 [exp] 145 / 6e-41 AT1G64230 295 / 1e-104 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.001G094900 [exp] 145 / 6e-41 AT1G64230 302 / 2e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme CL0049 [flax] [poplar] Tudor PF05641 [flax] [poplar] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Lus10000615 pacid=23140449 polypeptide=Lus10000615 locus=Lus10000615.g ID=Lus10000615.BGIv1.0 annot-version=v1.0 ATGTCCAAAGCTTCTTATTCAACGATCCCCCTTTTCAAACAGGGCGAACCAGTCGAGATCAGCTCAGACGACCCTGGTTTCCGCGGATCCTGGTTTTCTG GCACCGTCATCCGTAGAAACAAGGAGAACCCTAACCAGTACATAGTTCAGTACAACAAGCTCTTCGAGGACGAATCTGGCCGGATCCCATTGCAAGAAAC CCTTCACTGGGTCCAATTGCGGCCTCCGCCGCCGGCTGACATGAAGAAGGTCAAGTTCAAGTTTAGCGACGAAGTGGAGGCCTTCCATAGAGATGGCTGG TGGGAAGGGGTTATTACTGAAGAGCTGGCCGACGGGAAGTTCGCGGTGTTCTTCAGGAGCTCCAAGGAGCAGATTGTGTTTGGTGACAAGGACTTGAGGT TGCAGAGGGAATGGGTTCGTGGGAAGTGGAACCCGCCTTTCGAGCAACACCTGGTAGAGAAAGATAGATCAGCAGTGAAGACCTCCAAAGTTGTTAAAGA GGAGAAGCTATCTGATGCAAGGACCAACCAAGAGCATGTTGCGAGGAAGACACCCAAAAAAGCTTTCAAGTTCAGCCTGGGAATGCAAGTTGAGGTTACT ACTGAGGAAGAAGGTTTTGAAGGTGCTTGGTTTTCTGCAATCATCGTGGAAGCTTCTGGAGAGGATAAATACCTTGTTCAGTACTTGACCTTAAGAAATG AGGATGACACTGAATTTCTGAGTGAACACATACATGCTTGGCACATAAGACCGTCTCCACCAGAGACCGTTGTCGATTCATTCAAATTAATGGAAGAAGT CGATGCTTATTATAACGAGTGTTGGTGGGTGGGCGTGATTGTGAAGGTTTTGTCCGACAGCAAGTACCTCGTCTACTTCAGGGACACTGAAGAGGAATTA GTGTTCACGCAGGGTGACTTAAGGCAACATCAAGACTGGATAGGTGGCAAATGGATCATCCCTTCGCAGATGGGAGCTGAAAAGAGCTTTGAAATACCAT GCAAAGCATTTGATCATGAAGCCAGGGCTGCACTGGAGTTAAAATACTCGTACTGGAAAAATAACAAATTGGGAGAGGGAGTTAGCTTTGCCCTTGATAA CACCAACGCCGTTCCTCATCTCCCTCCACATAACACCATCCTTCAGAAACCCAACTGGCCTGCTACCACCGAAACCCATAGCCTTGCCTACTACCTACCT TTACCGATTATCTCGAACTGTGATTCACCGGACTCCGGAGAAGAAAAGAAACCTCAATGGCGAACAGAAACGCAGCGGCTGCTCAGTGAACCAGCCCCTG GAATTAGTGCTTCCCCTTCTGAAGAAAACATGCGATACTTCAATGTTATGATTCTTGGTCCAACACAATCACCTTATGAAGGTGGTGTTTTTAAGTTGGA ATTGTTCTTGCCTGAAGAATACCCAATGGCACCTCCCAAGGTTCGCTTCTTGACAAAAATTTATCACCCTAACATTGACAAGCTTGGAAGAATTTGCCTT GATATTCTTAAAGATAAATGGAGCCCTGCACTCCAGATCCGAACTGTTCTGCTAAGTATCCAAGCTCTCTTGAGCGCACCAAATCCTGATGATCCTCTGT CTGAGAACATTGCAAAGCACTGGAAGTCAAATGAAGCTGAAGCTGTTGAAACAGCTAAAGAATGGAGCCGCTTATATGCAAGTGGTGCATGA
AA sequence Show only first row Show all	>Lus10000615 pacid=23140449 polypeptide=Lus10000615 locus=Lus10000615.g ID=Lus10000615.BGIv1.0 annot-version=v1.0 MSKASYSTIPLFKQGEPVEISSDDPGFRGSWFSGTVIRRNKENPNQYIVQYNKLFEDESGRIPLQETLHWVQLRPPPPADMKKVKFKFSDEVEAFHRDGW WEGVITEELADGKFAVFFRSSKEQIVFGDKDLRLQREWVRGKWNPPFEQHLVEKDRSAVKTSKVVKEEKLSDARTNQEHVARKTPKKAFKFSLGMQVEVT TEEEGFEGAWFSAIIVEASGEDKYLVQYLTLRNEDDTEFLSEHIHAWHIRPSPPETVVDSFKLMEEVDAYYNECWWVGVIVKVLSDSKYLVYFRDTEEEL VFTQGDLRQHQDWIGGKWIIPSQMGAEKSFEIPCKAFDHEARAALELKYSYWKNNKLGEGVSFALDNTNAVPHLPPHNTILQKPNWPATTETHSLAYYLP LPIISNCDSPDSGEEKKPQWRTETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAPPKVRFLTKIYHPNIDKLGRICL DILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWSRLYASGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16890		UBC36 ,UBC13B	UBIQUITIN CONJUGATING ENZYME 1...		Lus10000615 [exp]	0	1
AT1G51160			SNARE-like superfamily protein...		Lus10039298 [exp]	7.5	0.8614
AT5G35700		FIM2, FIM5	FIMBRIN5, fimbrin-like protein...		Lus10012361 [exp]	11.2	0.8822
AT5G50230			Transducin/WD40 repeat-like su...		Lus10018081 [exp]	16.7	0.8538
AT5G37790			Protein kinase superfamily pro...		Lus10028518 [exp]	18.3	0.8237
AT1G30440			Phototropic-responsive NPH3 fa...		Lus10038531 [exp]	22.7	0.8633
AT5G35700		FIM2, FIM5	FIMBRIN5, fimbrin-like protein...		Lus10006407 [exp]	25.4	0.8201
AT3G11320			Nucleotide-sugar transporter f...		Lus10028255 [exp]	26.8	0.8314
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10015038 [exp]	27.4	0.8449
					Lus10015694 [exp]	28.2	0.8332
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10014584 [exp]	31.7	0.8507

Compare expression of checked genes

Lus10000615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.