Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46230 51 / 3e-09 Protein of unknown function, DUF538 (.1) AT1G56580 47 / 2e-07 SVB SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) AT1G09310 46 / 4e-07 Protein of unknown function, DUF538 (.1) AT1G30020 46 / 4e-07 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000355 [exp] 121 / 1e-36 AT5G46230 117 / 1e-34 Protein of unknown function, DUF538 (.1) Lus10017655 [exp] 93 / 2e-25 AT1G56580 115 / 1e-33 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Lus10013912 [exp] 75 / 4e-18 AT5G46230 123 / 5e-37 Protein of unknown function, DUF538 (.1) Lus10001891 [exp] 72 / 4e-17 AT5G46230 120 / 8e-36 Protein of unknown function, DUF538 (.1) Lus10033612 [exp] 47 / 2e-08 AT5G46230 49 / 2e-09 Protein of unknown function, DUF538 (.1) Lus10018630 [exp] 45 / 2e-06 AT1G09310 195 / 5e-64 Protein of unknown function, DUF538 (.1) Lus10039866 [exp] 44 / 3e-06 AT1G09310 196 / 5e-64 Protein of unknown function, DUF538 (.1) Lus10017330 [exp] 42 / 2e-05 AT4G24130 209 / 3e-70 Protein of unknown function, DUF538 (.1) Lus10001674 [exp] 41 / 2e-05 AT4G24130 212 / 2e-71 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G056700 [exp] 74 / 7e-18 AT1G09310 99 / 4e-27 Protein of unknown function, DUF538 (.1) Potri.004G084600 [exp] 64 / 5e-14 AT1G56580 96 / 9e-26 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.017G133300 [exp] 55 / 1e-10 AT1G56580 69 / 1e-15 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.004G064700 [exp] 52 / 3e-09 AT5G46230 184 / 4e-61 Protein of unknown function, DUF538 (.1) Potri.013G007000 [exp] 47 / 1e-07 AT1G56580 176 / 5e-57 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.005G011200 [exp] 47 / 2e-07 AT1G56580 192 / 4e-63 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.001G084200 [exp] 39 / 0.0001 AT4G24130 208 / 5e-70 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10000616 pacid=23140447 polypeptide=Lus10000616 locus=Lus10000616.g ID=Lus10000616.BGIv1.0 annot-version=v1.0 ATGGCAGCGGATCCAAAGCAAGGAGCTATAGTGAAGACGGGCCACGGAGAAGTAATGAAGATGGTGGTATTGCTCCTTGGAGAGTTCGAGCTCCCCGAAG GGCTGCTGCCGTTGGAAGCTGCAATAGAGACAGGGTACAATAAGGAAACTGGCTATTTTTGGATCGTGCGGAAAAAGGCAGTAACGCATGAGTTCAAGAT AATTAGCAAGCAGGTCAGTTACGACTCAGAGATTACTGGCTACATTGAGAAAAAGAAGGTGAAAACGCTAAAAGATGTCAAGGCCAAGGGGGTTGTTATT GTGGCCTCCGGTGAACGAGATCATTGCAGATGA
AA sequence Show only first row Show all	>Lus10000616 pacid=23140447 polypeptide=Lus10000616 locus=Lus10000616.g ID=Lus10000616.BGIv1.0 annot-version=v1.0 MAADPKQGAIVKTGHGEVMKMVVLLLGEFELPEGLLPLEAAIETGYNKETGYFWIVRKKAVTHEFKIISKQVSYDSEITGYIEKKKVKTLKDVKAKGVVI VASGERDHCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46230			Protein of unknown function, D...		Lus10000616 [exp]	0	1
AT1G20823			RING/U-box superfamily protein...		Lus10015837 [exp]	10.1	0.7473
					Lus10031606 [exp]	13.6	0.8236
AT3G57450			unknown protein		Lus10029496 [exp]	15.2	0.8501
AT5G18460			Protein of Unknown Function (D...		Lus10003100 [exp]	23.7	0.8363
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10041591 [exp]	26.5	0.7870
AT3G16210			F-box family protein (.1)		Lus10015408 [exp]	29.6	0.8313
AT4G34500			Protein kinase superfamily pro...		Lus10023574 [exp]	34.3	0.8012
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10023968 [exp]	39.8	0.7637
AT2G46690			SAUR-like auxin-responsive pro...		Lus10010110 [exp]	41.6	0.8143
AT5G06270			unknown protein		Lus10016982 [exp]	50.0	0.7258

Compare expression of checked genes

Lus10000616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.