Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58600 322 / 2e-110 Adaptin ear-binding coat-associated protein 1 NECAP-1 (.1) AT1G03900 141 / 3e-40 ABCI18, ATNAP4 ATP-binding cassette I18, non-intrinsic ABC protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000356 [exp] 509 / 0 AT3G58600 311 / 2e-105 Adaptin ear-binding coat-associated protein 1 NECAP-1 (.1) Lus10003544 [exp] 140 / 9e-40 AT1G03900 350 / 3e-122 ATP-binding cassette I18, non-intrinsic ABC protein 4 (.1) Lus10033908 [exp] 140 / 1e-39 AT1G03900 351 / 2e-122 ATP-binding cassette I18, non-intrinsic ABC protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G089800 [exp] 373 / 4e-131 AT3G58600 337 / 1e-116 Adaptin ear-binding coat-associated protein 1 NECAP-1 (.1) Potri.013G117900 [exp] 367 / 2e-128 AT3G58600 331 / 3e-114 Adaptin ear-binding coat-associated protein 1 NECAP-1 (.1) Potri.002G036400 [exp] 145 / 1e-41 AT1G03900 320 / 1e-110 ATP-binding cassette I18, non-intrinsic ABC protein 4 (.1) Potri.005G226400 [exp] 142 / 2e-40 AT1G03900 322 / 3e-111 ATP-binding cassette I18, non-intrinsic ABC protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF07933 [flax] [poplar] DUF1681 Protein of unknown function (DUF1681)
Representative CDS sequence Show only first row Show all	>Lus10000617 pacid=23140450 polypeptide=Lus10000617 locus=Lus10000617.g ID=Lus10000617.BGIv1.0 annot-version=v1.0 ATGCAGAAGGAAGAGGTGGCACCGCCTAAGGTTGGCGGCGGCGAAGAGTCTGACGATGTTGAGCTTGTGCTCTTTAAAGTACCCGAATGCTACGTGTACC TGATACCTCCAAGGAAAACAGCTGGTTCTTACAGAGCTGATGAGTGGGACATTAACAAATGGGCATGGGAAGGATCTTTGAAAGTTGTTAGCAAAGATGA AGAATGCATCATCAGGCTGGAAGACAAATGCACAGGCGAGCTATATGCAAGGGCATTTCTGAGGAAAGGGGAACCTCATCCTGTTGAACCTGTGATTGAT AGTAGCAGATATTTTGTCCTTCGTATAGAAGAAAACATCGGTGGAAGACTTCGGCATGCATTTATTGGAGTCGGTTTCCGGGAGAGAACAGAAGCATACG ACTTTCAGGCAGCACTGCATGACCACATGAAATACCTGGACAAGAAGAAAACTGCTGAGGAGATGGAACAACATTTTCAACACAGTTCAGGCCTCGGCTA CAGTTTAAAAGAAGGGGAGACCCTTGTCCTCCAAATTAAAAATCCGAGAACCGGCCGTGGGATCAAGTCTCAGTTCTGTGAACAAGGCGTGAACAATCTA TCATTGGAGGAGAAGAGTGGTAGTAACAAGGAGCCAATCCTAAGTATTAGACCTCCCCCACCCCCACCAGGTCCTCTTTCACCTACTGTAAGGTCCATGG CTATCACCCCGTCTAACTCTCCTCCAAATCTCAGTCTGGATGCAGCATCATCCAAGGCAGAGGCGAGCAACACCACAACAGAAAACAGTAAGGAACATCA GTTTCAGGAGAAGGAGACAAGAGATAACATTGACGATGATTTTGGAGACTTTCAGGCAGCTGGATAA
AA sequence Show only first row Show all	>Lus10000617 pacid=23140450 polypeptide=Lus10000617 locus=Lus10000617.g ID=Lus10000617.BGIv1.0 annot-version=v1.0 MQKEEVAPPKVGGGEESDDVELVLFKVPECYVYLIPPRKTAGSYRADEWDINKWAWEGSLKVVSKDEECIIRLEDKCTGELYARAFLRKGEPHPVEPVID SSRYFVLRIEENIGGRLRHAFIGVGFRERTEAYDFQAALHDHMKYLDKKKTAEEMEQHFQHSSGLGYSLKEGETLVLQIKNPRTGRGIKSQFCEQGVNNL SLEEKSGSNKEPILSIRPPPPPPGPLSPTVRSMAITPSNSPPNLSLDAASSKAEASNTTTENSKEHQFQEKETRDNIDDDFGDFQAAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58600			Adaptin ear-binding coat-assoc...		Lus10000617 [exp]	0	1
AT3G58600			Adaptin ear-binding coat-assoc...		Lus10000356 [exp]	1.0	0.9150
AT5G62890			Xanthine/uracil permease famil...		Lus10043460 [exp]	3.7	0.8194
AT2G24300			Calmodulin-binding protein (.1...		Lus10019056 [exp]	4.7	0.8736
AT1G36730			Translation initiation factor ...		Lus10000448 [exp]	5.0	0.8246
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025226 [exp]	7.9	0.7931
AT5G51480		SKS2	SKU5 similar 2 (.1)		Lus10027207 [exp]	9.5	0.8099
AT4G31860			Protein phosphatase 2C family ...		Lus10003423 [exp]	12.2	0.8476
AT2G39130			Transmembrane amino acid trans...		Lus10037974 [exp]	19.0	0.7279
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10041056 [exp]	19.9	0.8038
AT3G02740			Eukaryotic aspartyl protease f...		Lus10041103 [exp]	20.8	0.7911

Compare expression of checked genes

Lus10000617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.