Plant FIBer expression Database

Lus10000618 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G14520 741 / 0 pescadillo-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002201
[exp]
534 / 0 AT5G14520 351 / 2e-117 pescadillo-related (.1)
Lus10001361
[exp]
415 / 1e-142 AT5G14520 312 / 3e-103 pescadillo-related (.1)
Lus10000357
[exp]
252 / 3e-81 AT5G14520 180 / 2e-54 pescadillo-related (.1)
Lus10001362
[exp]
223 / 9e-70 AT5G14520 164 / 3e-48 pescadillo-related (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G121400
[exp]
835 / 0 AT5G14520 799 / 0.0 pescadillo-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0459 BRCT-like PF00533 BRCT BRCA1 C Terminus (BRCT) domain
CL0459 PF06732 Pescadillo_N Pescadillo N-terminus
Representative CDS sequence
>Lus10000618 pacid=23140445 polypeptide=Lus10000618 locus=Lus10000618.g ID=Lus10000618.BGIv1.0 annot-version=v1.0
ATGACGAAGACGGACATGACGAAGAAGACATCGGCCAAACTGAAGAAGAACAAGCACTACAGACCTGCTGGGAAGAAGAAGGAAGGGAACGCTGCCCGGT
ACATGACCCGGTCACAGGCTATCAAGCAGCTCCAAGTTAATCTCAGCGTCTTCAGGCAGCTGTGCATTCTCAAAGGTGTGTTCCCTAGAGAACCGAAGAA
GAAGGTTAGAGGGAATAACCAAACGTACTACCATGTCAAGGATATAAATTTCATCCAACATGAACCCTTACTTGAGAAGTTGAGGGAAAAGAGGGCATAC
GAAAGGAAAATACAGAAGGCTTTGGCTAAGAAGAACGAAGATCTAGCAACTCGTCTTCGAACTCGAGAGCCAACTTACACATTGGACAAGCTCATTCTAG
AAAGGTACCCAAAATTTGTTGATTCCCTCAGAGACTTGGATGATTGTCTTTCTATGGTGCACCTGTTTGCAGCATTACCTGCTGTAGAGAGGTTAAAAAT
TGATGTGGTGCGGGTTCACAGTTGTCGAAGGTTGACTCATGAGTGGCAAGCTTATGTTGCTCGCTGTCATAAATTGCGAAAGGTTTTTGTATCAGTAAAA
GGCATATATTATCAGGCTGAGGTTGAAGGTCAGAAAATTACATGGCTGACCCTGCATGCAATGCAACAAGTTCTGCCTGATGGTGTTAACTTCAGTGTTA
TGCTGACGTTTTTGGAGTTCTATGAGACCCTACTTGGCTTTGTTAATTTTAAGCTCTACCATTCCATCAATATCAAGTATCCACCAATTCTTGATACCAG
ACTAGAAGCTCTAGCAGCAGATCTGTATGCTCTCACACGGTATATTAATAGAAACTCTAAGCATGTTATTGAAGAGCACAAAGATTCTGATTCCTCTAAA
ATAGAGCCAACTGAAGGCCGAAAAGAGGGTACTCAATTTGAAGAGTCTGAGTTAAGACTTTCGCAACTTCACCATCAACTCCCATCAAATGAACCTGGAG
CATTGATGCACCTCATTGAAGAAGACACCGAATATGATGATGATGATCCAGATACAAAGGAGTGTAGGAAGCTGTTCAAGAATATGAAGTTCTATCTAAG
CCGTGAGGTTCCTCGGGAGTCTTTGCTTTTTGTCATTCCTGCTTTTGGTGGTGTTGTTTCATGGGAAGGGGACGGAGCTCCGTTCACTAAAGACGACCAA
AGCATTACACATCAGATCGTGGATAGGCCAACTCAAGATCACAAGTTTTTCTCCCGGGAATATATTCAACCTCAGTGGGTTTATGATTGTGTAAATGCTA
GGATCATACTACCAACTGATATCTACATGGTGGGAAGGGTTCCTCCTCCGCATCTGTCTCCTTTTGTCGATAACGAAGTGGAAGGGTATATCCCTGATTA
CGCGGAGACCATCAAACGTTTACAGGCTGCCGCCAAGAATGAAGTCCTCCCCATGCCAGGTGTGGGTAAGGATGACTTAGAGGATCCTCAGATGTTGTTA
GCTGAAGGATATCTTAGTCGAACCGAGGCTATTGAATCTGCCGAGAGAAAAGAAAAGTTGGCAACCTTGGAGAAGCAATATCATGAAGAGCTTAAGATTG
AACTACAAGGCAGATCTCTTTCGAAGAAAACTGAGGACAGCTCTGTTGAGGGCACCGAGGCCAAAGTAGAGTCTTGTCCTACCATTGAACAGATTGCTAA
AGACACTGATACCATGTCGGATATGATGATGTCAAGAAAGAAAAGAGGCCTTTCTAAAGCAATAGAGATTGGTGAAGAACGGAAGAAAGCGAAAGTCAAT
AAGCTCAAGGAGCGGAAGAAGAAACTGGCTGAGAGTTCTTCCTAG
AA sequence
>Lus10000618 pacid=23140445 polypeptide=Lus10000618 locus=Lus10000618.g ID=Lus10000618.BGIv1.0 annot-version=v1.0
MTKTDMTKKTSAKLKKNKHYRPAGKKKEGNAARYMTRSQAIKQLQVNLSVFRQLCILKGVFPREPKKKVRGNNQTYYHVKDINFIQHEPLLEKLREKRAY
ERKIQKALAKKNEDLATRLRTREPTYTLDKLILERYPKFVDSLRDLDDCLSMVHLFAALPAVERLKIDVVRVHSCRRLTHEWQAYVARCHKLRKVFVSVK
GIYYQAEVEGQKITWLTLHAMQQVLPDGVNFSVMLTFLEFYETLLGFVNFKLYHSINIKYPPILDTRLEALAADLYALTRYINRNSKHVIEEHKDSDSSK
IEPTEGRKEGTQFEESELRLSQLHHQLPSNEPGALMHLIEEDTEYDDDDPDTKECRKLFKNMKFYLSREVPRESLLFVIPAFGGVVSWEGDGAPFTKDDQ
SITHQIVDRPTQDHKFFSREYIQPQWVYDCVNARIILPTDIYMVGRVPPPHLSPFVDNEVEGYIPDYAETIKRLQAAAKNEVLPMPGVGKDDLEDPQMLL
AEGYLSRTEAIESAERKEKLATLEKQYHEELKIELQGRSLSKKTEDSSVEGTEAKVESCPTIEQIAKDTDTMSDMMMSRKKRGLSKAIEIGEERKKAKVN
KLKERKKKLAESSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G14520 pescadillo-related (.1) Lus10000618
[exp]
0 1
AT5G25757 RNA polymerase I-associated fa... Lus10038622
[exp]
2.0 0.9692
AT1G10490 Domain of unknown function (DU... Lus10006807
[exp]
2.4 0.9656
AT1G69070 unknown protein Lus10019174
[exp]
2.4 0.9619
AT1G80410 OMA, EMB2753 OMISHA, EMBRYO DEFECTIVE 2753,... Lus10023111
[exp]
3.9 0.9598
AT3G11830 TCP-1/cpn60 chaperonin family ... Lus10008406
[exp]
4.5 0.9603
AT1G63810 unknown protein Lus10026014
[exp]
4.9 0.9596
AT2G40360 Transducin/WD40 repeat-like su... Lus10011471
[exp]
5.1 0.9500
AT1G31660 unknown protein Lus10032891
[exp]
5.2 0.9560
AT2G18900 Transducin/WD40 repeat-like su... Lus10003637
[exp]
5.3 0.9580
AT1G80410 OMA, EMB2753 OMISHA, EMBRYO DEFECTIVE 2753,... Lus10011474
[exp]
6.3 0.9579

Lus10000618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.