Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71140 493 / 3e-171 MATE efflux family protein (.1) AT1G15170 483 / 1e-167 MATE efflux family protein (.1) AT1G15150 472 / 3e-163 MATE efflux family protein (.1) AT1G15180 465 / 2e-160 MATE efflux family protein (.1.2) AT1G15160 462 / 3e-159 MATE efflux family protein (.1) AT2G04090 416 / 4e-141 MATE efflux family protein (.1) AT2G04100 412 / 6e-140 MATE efflux family protein (.1) AT2G04080 410 / 5e-139 MATE efflux family protein (.1) AT1G64820 410 / 1e-138 MATE efflux family protein (.1) AT2G04050 403 / 2e-136 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018136 [exp] 513 / 4e-179 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10029694 [exp] 489 / 1e-169 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10042732 [exp] 488 / 2e-169 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10028540 [exp] 477 / 6e-159 AT1G15170 537 / 0.0 MATE efflux family protein (.1) Lus10018134 [exp] 476 / 8e-159 AT1G15170 542 / 0.0 MATE efflux family protein (.1) Lus10018135 [exp] 457 / 1e-157 AT1G15170 524 / 0.0 MATE efflux family protein (.1) Lus10028504 [exp] 429 / 3e-146 AT1G64820 556 / 0.0 MATE efflux family protein (.1) Lus10009140 [exp] 424 / 2e-144 AT1G64820 560 / 0.0 MATE efflux family protein (.1) Lus10004899 [exp] 417 / 5e-143 AT1G15170 474 / 2e-166 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G116900 [exp] 550 / 0 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.010G117000 [exp] 502 / 1e-174 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.008G126500 [exp] 494 / 1e-171 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.004G093400 [exp] 454 / 3e-156 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.017G120500 [exp] 431 / 3e-147 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.004G094900 [exp] 430 / 1e-146 AT1G71140 503 / 3e-176 MATE efflux family protein (.1) Potri.004G094700 [exp] 426 / 5e-145 AT2G04100 425 / 3e-145 MATE efflux family protein (.1) Potri.017G120600 [exp] 414 / 1e-140 AT1G66760 468 / 2e-162 MATE efflux family protein (.1.2) Potri.004G094800 [exp] 410 / 2e-139 AT2G04100 479 / 2e-167 MATE efflux family protein (.1) Potri.019G075800 [exp] 400 / 4e-136 AT1G71140 407 / 2e-139 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10000619 pacid=23140446 polypeptide=Lus10000619 locus=Lus10000619.g ID=Lus10000619.BGIv1.0 annot-version=v1.0 ATGAGATACGGTGGTTCGGACTCTCAAACCTTGGAAGAAGAAGAAGCAGAAGAGGAAACACTCTCCCTCAAACAGGGTATTGGTAGTAATCGATCCGATG AGATAAATGGTCAAGAAACCAGCAAAAAGAGCACAGGGCATCGGAACGTATTCTCGTCTGAAGTGAAACGAGTGAGTTCATTGGCCGCTCCTCTAATCAC CATCAATCTGTCACAGTACTTCCTCCAAGTAATTTCGCTCACAATGGTGGGCCACCTCGGAGATCAGCTCGCTCTTTCCAGCTCCGCTATCGCCATCTCT TTCTCCGCAGTCACGGGCTTCAGCCCCACCTGCGGAATCGCGTGTGCGCTGGAGACACTGTGCGGGCAGGCATACGGAGCGAAACAGTACAGACAATTTG GTGTTCAAGTTCAGACCGCCATATTCTCCGGCAATTTGGTCTGCATCCCAATCTCTGTGCTGTGGATTTACATGGAGGATTTGCTCGTGTTCACGGGGCA GGACCCATTGATCTCCCATGAGGCCGGAAAATTCACCATGTGCCTCATTCCGGCTCTCTTCGCCTACGCCACTCTGCAAGCCTTAGTCCGTTATTTCCAG ATGCAGAGTTTGACTACTCCATTGCTGATCAGCTCCTCCCTCACCTTGTGCTTCCACATTATACTGTGTTGGGTTCTAGTGTTTCCTTGCGGGTTCGGGA GCCGTGGAGGTGCTTTTGCTATTGGGATTTCGTATTGGTTCAACGTCATTTTGCTTGCTTTTTATATGTTATCCCCTGCTTGTGCCAAGACCAGAGTCCC TTTGTCCATGGAGCTTATTAAAGGCACCGCCAAGTTTTTCCGCTATGCAATCCCTTCAGCTGGAATGATATGCCTTGAATGGTGGTCATTTGAGTTGCTC ATATTGATGTCTGGTCTGTTACCAAATCCTAAGCTTGAGACATCCGTTCTTTCGTTAAGCTTAGCAACCATGGCAACTCTCTATACAATACCAGAAGGGA TAGGAGCAGCAGCAAGCACAAGAGTTTCCAATGAATTGGGAGCAGGGAACCCCAGAGCAGCCTGTGTAGCAGTGAGCACCTCGGTGTTCCTCTCATGTGC TCAAGCACTAACGGTCAGCTCAGTGATGTTTGGGTGCAGACATTTATTAGGCCATATCTTCAGCAGTGATAAGCAAGTGGTGGATTATGTGACAACAATG GCTCCTTTGATATGTGTATCAGTGATACTAGACAGCGTCCGAGTGACCCTTTCAGGAGTTGCGAGGGGATGTGGATGGCAGAATTTGGGTGCTTATGTCA ACCTGGCATCCTATTACATCTGTGGAGTTCCTCTCTCAGCAGTATTGGGGTTCTGGTTGCAATTGAGAGGGCCAGGACTCTGGGCCGGGATTCAAGTTGG TTCATTTTTGCAGAACATTTTACTGACTATCATAACATGTCGAACGGATTGGGAACGCGAGGCAAACAAGACAATGGAGAGGGTATTTGATATAATCCCC ATGGAGAAATGGAAGAGCAATAAGGGAGCGTATCAGCAGGGTGACATTTTTGTGCTTGTCAAAAATGTAAGAGATGAAGCCTCCTGA
AA sequence Show only first row Show all	>Lus10000619 pacid=23140446 polypeptide=Lus10000619 locus=Lus10000619.g ID=Lus10000619.BGIv1.0 annot-version=v1.0 MRYGGSDSQTLEEEEAEEETLSLKQGIGSNRSDEINGQETSKKSTGHRNVFSSEVKRVSSLAAPLITINLSQYFLQVISLTMVGHLGDQLALSSSAIAIS FSAVTGFSPTCGIACALETLCGQAYGAKQYRQFGVQVQTAIFSGNLVCIPISVLWIYMEDLLVFTGQDPLISHEAGKFTMCLIPALFAYATLQALVRYFQ MQSLTTPLLISSSLTLCFHIILCWVLVFPCGFGSRGGAFAIGISYWFNVILLAFYMLSPACAKTRVPLSMELIKGTAKFFRYAIPSAGMICLEWWSFELL ILMSGLLPNPKLETSVLSLSLATMATLYTIPEGIGAAASTRVSNELGAGNPRAACVAVSTSVFLSCAQALTVSSVMFGCRHLLGHIFSSDKQVVDYVTTM APLICVSVILDSVRVTLSGVARGCGWQNLGAYVNLASYYICGVPLSAVLGFWLQLRGPGLWAGIQVGSFLQNILLTIITCRTDWEREANKTMERVFDIIP MEKWKSNKGAYQQGDIFVLVKNVRDEAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71140			MATE efflux family protein (.1...		Lus10000619 [exp]	0	1
AT1G63980			D111/G-patch domain-containing...		Lus10017524 [exp]	8.0	0.7088
AT1G47380			Protein phosphatase 2C family ...		Lus10009763 [exp]	9.8	0.7730
AT1G19780		ATCNGC8	cyclic nucleotide gated channe...		Lus10041662 [exp]	12.7	0.7254
AT5G54380		THE1	THESEUS1, protein kinase famil...		Lus10038595 [exp]	13.7	0.7084
AT2G22530			Alkaline-phosphatase-like fami...		Lus10035939 [exp]	13.7	0.6939
					Lus10008302 [exp]	16.0	0.7564
					Lus10034740 [exp]	22.5	0.7501
AT4G18950			Integrin-linked protein kinase...		Lus10029277 [exp]	23.7	0.6785
AT2G17890		CPK16	calcium-dependent protein kina...		Lus10041914 [exp]	25.7	0.7425
AT4G13450			Adenine nucleotide alpha hydro...		Lus10014459 [exp]	28.9	0.7289

Compare expression of checked genes

Lus10000619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.