Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42570 175 / 2e-54 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 (.1) AT2G34070 163 / 1e-49 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT1G29050 160 / 2e-48 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G31110 150 / 1e-44 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G14850 142 / 6e-42 TBL41 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) AT1G78710 139 / 3e-41 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT2G30900 136 / 2e-39 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT5G58600 126 / 3e-36 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30010 123 / 5e-34 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1) AT2G38320 115 / 3e-31 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002198 [exp] 240 / 1e-79 AT2G42570 494 / 1e-176 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10033617 [exp] 205 / 6e-66 AT2G42570 486 / 6e-173 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10000988 [exp] 153 / 6e-46 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10013929 [exp] 150 / 8e-45 AT1G29050 519 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10024176 [exp] 127 / 2e-35 AT1G29050 366 / 5e-125 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10015309 [exp] 124 / 1e-34 AT2G34070 499 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 37 (.1) Lus10039559 [exp] 124 / 1e-34 AT1G29050 374 / 1e-128 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10019774 [exp] 122 / 8e-34 AT1G29050 361 / 2e-123 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10031301 [exp] 118 / 3e-32 AT5G58600 452 / 1e-158 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G118500 [exp] 183 / 1e-57 AT2G42570 512 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.019G090200 [exp] 183 / 2e-57 AT2G42570 507 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.011G064700 [exp] 155 / 1e-46 AT1G29050 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G055000 [exp] 150 / 6e-45 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201600 [exp] 143 / 3e-42 AT1G29050 408 / 2e-142 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201700 [exp] 143 / 5e-42 AT1G29050 403 / 5e-140 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.001G023900 [exp] 139 / 1e-40 AT1G29050 383 / 3e-132 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106200 [exp] 138 / 3e-40 AT1G29050 416 / 4e-145 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106300 [exp] 135 / 3e-39 AT3G14850 453 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Potri.004G135600 [exp] 133 / 2e-38 AT2G30900 416 / 1e-145 TRICHOME BIREFRINGENCE-LIKE 43 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000620 pacid=23140451 polypeptide=Lus10000620 locus=Lus10000620.g ID=Lus10000620.BGIv1.0 annot-version=v1.0 ATGGGTTTCTTCATATTTGTTCTTGCATTTCTATTATTAGCAGAAACAAGCAGCAGTCTAAACAACAACAGCAGTAGGAGAGAAACATTGGGAGTGAGTA AATGTAATTGGTTCCGAGGGACATGGGTTTACGATCCTTCATACCCACTCTACGACTCTGCCAAATGTCCCTTCATGGATCCTGAATTTGACTGCTTCAA GTTCGGACGCCCTGACAAGAATTATCTCAAGTACAGGTGGCAGCCCTTCGCATGCAATCTCCCCAGGTTTAATGGGTTGAATTTGCTGGAGAAATGGAGA GGCAAGAAGATAATGTTCGTTGGAGATTCACTGAGCTTGAACCAGTTTCTGTCTATGGCTTGCATGATTCATTCTTGGGTCCCTAATTCCAGATACTCCT TCCTCACAGCTCACGGCCTCGCTTCCCTCACTTTTCTGCTTGATATGGTAGTAATGGGGTCATGA
AA sequence Show only first row Show all	>Lus10000620 pacid=23140451 polypeptide=Lus10000620 locus=Lus10000620.g ID=Lus10000620.BGIv1.0 annot-version=v1.0 MGFFIFVLAFLLLAETSSSLNNNSSRRETLGVSKCNWFRGTWVYDPSYPLYDSAKCPFMDPEFDCFKFGRPDKNYLKYRWQPFACNLPRFNGLNLLEKWR GKKIMFVGDSLSLNQFLSMACMIHSWVPNSRYSFLTAHGLASLTFLLDMVVMGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Lus10000620 [exp]	0	1
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Lus10002226 [exp]	6.2	0.7362
AT4G31990		AAT3, ATAAT1, A...	ASPARTATE AMINOTRANSFERASE DEF...		Lus10001753 [exp]	11.0	0.7387
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10010833 [exp]	14.2	0.7119
AT5G45030			Trypsin family protein (.1.2)		Lus10036208 [exp]	14.3	0.7133
AT5G46240		KAT1	potassium channel in Arabidops...		Lus10028128 [exp]	16.4	0.6885
AT1G10550		XTH33, XET	xyloglucan:xyloglucosyl transf...		Lus10013000 [exp]	20.5	0.6981
AT4G17615		ATCBL1, SCABP5,...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10011028 [exp]	21.3	0.7207
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10027507 [exp]	22.0	0.7187
AT1G80910			Protein of unknown function (D...		Lus10021811 [exp]	27.7	0.6931
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Lus10039098 [exp]	40.1	0.7073

Compare expression of checked genes

Lus10000620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.