Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22440 435 / 2e-152 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G22430 433 / 2e-151 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT4G22110 427 / 4e-149 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G42250 377 / 2e-129 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G64710 303 / 9e-101 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G43940 298 / 9e-99 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G77120 296 / 7e-98 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT1G32780 295 / 4e-97 GroES-like zinc-binding dehydrogenase family protein (.1) AT5G24760 285 / 8e-94 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT5G63620 103 / 3e-24 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004785 [exp] 602 / 0 AT1G22430 536 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10004786 [exp] 597 / 0 AT1G22430 529 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10040457 [exp] 368 / 8e-126 AT5G42250 488 / 7e-173 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10005651 [exp] 331 / 1e-111 AT5G42250 430 / 7e-151 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10023572 [exp] 334 / 2e-111 AT5G42250 439 / 1e-152 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10010506 [exp] 299 / 7e-99 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10034042 [exp] 297 / 4e-98 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029759 [exp] 296 / 7e-98 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10042787 [exp] 293 / 1e-96 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G013400 [exp] 390 / 3e-134 AT5G42250 521 / 0.0 Zinc-binding alcohol dehydrogenase family protein (.1) Potri.011G152900 [exp] 316 / 9e-105 AT1G32780 545 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1) Potri.005G060000 [exp] 308 / 1e-102 AT1G77120 658 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.011G152800 [exp] 309 / 3e-102 AT1G32780 540 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1) Potri.007G108701 [exp] 302 / 5e-100 AT1G77120 656 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108601 [exp] 301 / 7e-100 AT1G77120 634 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060300 [exp] 301 / 8e-100 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108401 [exp] 301 / 1e-99 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060200 [exp] 300 / 2e-99 AT1G77120 627 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108500 [exp] 300 / 3e-99 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10000624 pacid=23147722 polypeptide=Lus10000624 locus=Lus10000624.g ID=Lus10000624.BGIv1.0 annot-version=v1.0 ATGCTCCGACTTAATTCCTCACTCACTGATCAGTCTTGTTTCCCCATACGTACAGCTGCAATTTGCAGAAACCCGGAGGAGGAACTGGTGCTGGAAGAAA TCGAGGTGGACCCACCGAAAACGTACGAAGTCCGGCTTAAAATCATCTGCACATCACTCTGCCACACTGACGTCACCTTCTGGAAAATGAAACCAGGACC CATGTCTGCGTTCCCGAGAATATTGGGCCACGAGGCGGTTGGATTGGTTGAGAGCGTCGGGGAAGGAGTGGAGGGATGGAAAGAAGGAGAGTTAGTGTTG CCGGTGTGCGTCCCCGACTGCGAGGAATGCAAGGACTGCAAATCGGCCAAGAGCAACATCTGCTCCAGGTTCTGGAAGAAAATGGGGGGGTTTGGGATGG CGAGGGATGGGACGAGCAGATTCCGCGACGGGAAAGGAGAAGCAATTCATCATCTCCTTGGGATTTCGAGCTTTTCAGAGTATACGGTCGTAGACGTGGT TAACCTTGTGAAGATTGAGTCCGATTTTCCCGTCGATAAGGCCTGCTTGCTCAGCTGTGGCGTCACCACAGGAGTTGGGGCAGCATGGAATGCGGCAGAT GTGGAAGAGGGATCTACTGTTGCCATCTTTGGCCTCGGAGCTGTAGGCCTTGCGGTCGCAGAAGGAGCAAGGATACGGGGAGCGTCGAAAATCATAGGGG TCGATTTGAATCCTGCAAAGTTCGAGTTGGGAAAAAAATTCGGGATAACTGACTTTGTCAACCCTACAACTATAGGGGAAAAGTGTGTAAGCGAGGTGAT AAAGGAATTGACGGATGGAGGAGCTGATTATTGCTTCGAATGTATTGGCTTGGCTTCATTGATGACCGATGCTTTCTCTAGCAGCAGAGAGGGATGGGGA AAGACTATAGTAGTGGGGATAGAAATGCACGGCTTGCCGCTAGTAGTGAGCCCCTACGAACTTGTTAAAGGTCGAAGCATTTCCGGCACCTATTTTGGAG GATTGAAGCCCAAGACTGACATTCCAATGCTTGCCAAGAAATATGTGGACAAGGAGCTGAACTTGGAGTCGTTTATAACACACGAAGTTGGATTCAAAGA CATCAACAAAGCATTCGAGCTTTTGTCGGAAGGGAAGAGCGTACGATGCCTTATATGGATGGATGCCAATAACTAG
AA sequence Show only first row Show all	>Lus10000624 pacid=23147722 polypeptide=Lus10000624 locus=Lus10000624.g ID=Lus10000624.BGIv1.0 annot-version=v1.0 MLRLNSSLTDQSCFPIRTAAICRNPEEELVLEEIEVDPPKTYEVRLKIICTSLCHTDVTFWKMKPGPMSAFPRILGHEAVGLVESVGEGVEGWKEGELVL PVCVPDCEECKDCKSAKSNICSRFWKKMGGFGMARDGTSRFRDGKGEAIHHLLGISSFSEYTVVDVVNLVKIESDFPVDKACLLSCGVTTGVGAAWNAAD VEEGSTVAIFGLGAVGLAVAEGARIRGASKIIGVDLNPAKFELGKKFGITDFVNPTTIGEKCVSEVIKELTDGGADYCFECIGLASLMTDAFSSSREGWG KTIVVGIEMHGLPLVVSPYELVKGRSISGTYFGGLKPKTDIPMLAKKYVDKELNLESFITHEVGFKDINKAFELLSEGKSVRCLIWMDANN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10000624 [exp]	0	1
AT5G62130			Per1-like family protein (.1.2...		Lus10031658 [exp]	7.7	0.8740
					Lus10014855 [exp]	13.6	0.7860
AT3G08030			Protein of unknown function, D...		Lus10029503 [exp]	13.7	0.8569
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10016144 [exp]	15.4	0.8528
AT1G63940		MDAR6	monodehydroascorbate reductase...		Lus10028763 [exp]	21.7	0.8581
					Lus10025590 [exp]	26.7	0.7575
AT5G63180			Pectin lyase-like superfamily ...		Lus10036946 [exp]	29.5	0.8527
AT4G14950		KMS1	Killing Me Slowly 1, SNARE ass...		Lus10004916 [exp]	33.3	0.7159
AT5G65030			unknown protein		Lus10041692 [exp]	35.9	0.8191
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10036177 [exp]	36.3	0.8500

Compare expression of checked genes

Lus10000624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.