Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58390 172 / 5e-54 Peroxidase superfamily protein (.1) AT5G58400 172 / 7e-54 Peroxidase superfamily protein (.1) AT5G05340 170 / 2e-53 Peroxidase superfamily protein (.1) AT1G14550 146 / 4e-44 Peroxidase superfamily protein (.1) AT1G14540 135 / 9e-40 Peroxidase superfamily protein (.1) AT2G18150 131 / 5e-38 Peroxidase superfamily protein (.1) AT4G36430 129 / 3e-37 Peroxidase superfamily protein (.1) AT2G18140 126 / 4e-36 Peroxidase superfamily protein (.1) AT5G66390 125 / 6e-36 Peroxidase superfamily protein (.1) AT3G50990 121 / 4e-34 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006534 [exp] 258 / 9e-88 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10000346 [exp] 253 / 8e-85 AT5G05340 394 / 8e-137 Peroxidase superfamily protein (.1) Lus10034207 [exp] 186 / 3e-59 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10032786 [exp] 181 / 2e-57 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10009933 [exp] 179 / 7e-57 AT5G05340 364 / 2e-126 Peroxidase superfamily protein (.1) Lus10030148 [exp] 177 / 2e-56 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1) Lus10003573 [exp] 176 / 8e-56 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1) Lus10008581 [exp] 170 / 2e-53 AT5G05340 367 / 6e-128 Peroxidase superfamily protein (.1) Lus10024205 [exp] 157 / 4e-50 AT1G14550 212 / 3e-69 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G143200 [exp] 202 / 5e-66 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 183 / 2e-58 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.013G156500 [exp] 180 / 5e-57 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.013G156400 [exp] 174 / 2e-54 AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1) Potri.016G132700 [exp] 173 / 2e-54 AT5G05340 367 / 2e-127 Peroxidase superfamily protein (.1) Potri.001G458900 [exp] 168 / 2e-52 AT1G14540 389 / 3e-136 Peroxidase superfamily protein (.1) Potri.001G458700 [exp] 166 / 2e-51 AT1G14540 394 / 4e-138 Peroxidase superfamily protein (.1) Potri.006G107000 [exp] 164 / 4e-51 AT5G05340 349 / 2e-120 Peroxidase superfamily protein (.1) Potri.016G132800 [exp] 162 / 4e-50 AT5G05340 336 / 3e-115 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 159 / 4e-49 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10000625 pacid=23147723 polypeptide=Lus10000625 locus=Lus10000625.g ID=Lus10000625.BGIv1.0 annot-version=v1.0 ATGACCGTCCTGTCCGGCGGCCACACCGTCGGCCAAGCCCGGTGCACCACTTTCCGCAACCGGATCTACAACGAGACCAACATCGGACAGAACTTTGCCA CCAACAGGAGGGCGAACTGCCCTGCCACTGCTGGCACGGGAGACGGGAACTTGGCCCCACTCGACTTCTCTCCGAACAGATTCGACAATGCTTATTACAG GGAGCTTGTGGGCCAGCGTGGGCTACTGCACTCCGACCAGCAGCTGTTCAGCGGTGGGTCCCAAGATGCTTTGGTCAGGACTTATAGTACCAATGTCAAT GCATTTGCTAGGGATTTCGCAAATGCCATGATTAGGATGGGGAACCTTAGTCCTCTTACTGGGACTAATGGCGAGATTAGACGTAATTGCAGGCTTATTA ACTAA
AA sequence Show only first row Show all	>Lus10000625 pacid=23147723 polypeptide=Lus10000625 locus=Lus10000625.g ID=Lus10000625.BGIv1.0 annot-version=v1.0 MTVLSGGHTVGQARCTTFRNRIYNETNIGQNFATNRRANCPATAGTGDGNLAPLDFSPNRFDNAYYRELVGQRGLLHSDQQLFSGGSQDALVRTYSTNVN AFARDFANAMIRMGNLSPLTGTNGEIRRNCRLIN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05340			Peroxidase superfamily protein...		Lus10000625 [exp]	0	1
					Lus10000296 [exp]	8.6	0.7842
AT2G39200		ATMLO12, MLO12	MILDEW RESISTANCE LOCUS O 12, ...		Lus10040388 [exp]	12.0	0.8377
					Lus10032744 [exp]	14.4	0.7932
AT1G01490			Heavy metal transport/detoxifi...		Lus10014967 [exp]	18.8	0.8321
AT5G05340			Peroxidase superfamily protein...		Lus10006535 [exp]	22.4	0.8216
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10018510 [exp]	27.9	0.8302
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Lus10009939 [exp]	46.6	0.8217
AT5G46490			Disease resistance protein (TI...		Lus10042465 [exp]	47.2	0.7780
AT5G05340			Peroxidase superfamily protein...		Lus10000626 [exp]	48.6	0.7488
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10034332 [exp]	55.3	0.7656

Compare expression of checked genes

Lus10000625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.