Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38510 322 / 3e-107 Rhomboid-related intramembrane serine protease family protein (.1.2) AT1G25290 85 / 5e-18 ATRBL10 RHOMBOID-like protein 10 (.1.2) AT1G12750 62 / 1e-10 ATRBL6 RHOMBOID-like protein 6 (.1.2.3) AT1G63120 61 / 4e-10 ATRBL2 RHOMBOID-like 2 (.1) AT3G53780 59 / 3e-09 ATRBL4 RHOMBOID-like protein 4 (.1.2) AT5G07250 58 / 5e-09 ATRBL3 RHOMBOID-like protein 3 (.1.2) AT2G29050 57 / 8e-09 ATRBL1 RHOMBOID-like 1 (.1.2) AT1G52580 55 / 2e-08 ATRBL5 RHOMBOID-like protein 5 (.1) AT1G77860 53 / 1e-07 KOM KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) AT4G23070 46 / 2e-05 ATRBL7 RHOMBOID-like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023145 [exp] 742 / 0 AT5G38510 339 / 7e-114 Rhomboid-related intramembrane serine protease family protein (.1.2) Lus10022969 [exp] 99 / 4e-23 AT1G25290 309 / 3e-104 RHOMBOID-like protein 10 (.1.2) Lus10001612 [exp] 81 / 1e-16 AT1G25290 242 / 2e-78 RHOMBOID-like protein 10 (.1.2) Lus10024497 [exp] 61 / 4e-10 AT1G63120 450 / 2e-160 RHOMBOID-like 2 (.1) Lus10017840 [exp] 60 / 1e-09 AT1G63120 441 / 9e-157 RHOMBOID-like 2 (.1) Lus10027436 [exp] 60 / 1e-09 AT5G07250 392 / 1e-135 RHOMBOID-like protein 3 (.1.2) Lus10003971 [exp] 59 / 3e-09 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10023789 [exp] 59 / 3e-09 AT2G29050 488 / 3e-173 RHOMBOID-like 1 (.1.2) Lus10004965 [exp] 54 / 1e-07 AT2G29050 486 / 6e-173 RHOMBOID-like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G112900 [exp] 429 / 6e-148 AT5G38510 364 / 3e-122 Rhomboid-related intramembrane serine protease family protein (.1.2) Potri.003G019500 [exp] 78 / 7e-16 AT1G25290 354 / 3e-122 RHOMBOID-like protein 10 (.1.2) Potri.006G086300 [exp] 64 / 8e-11 AT2G29050 422 / 6e-147 RHOMBOID-like 1 (.1.2) Potri.001G241300 [exp] 62 / 2e-10 AT2G29050 441 / 6e-155 RHOMBOID-like 1 (.1.2) Potri.003G122900 [exp] 62 / 2e-10 AT1G63120 374 / 3e-130 RHOMBOID-like 2 (.1) Potri.012G139600 [exp] 61 / 4e-10 AT5G07250 324 / 6e-110 RHOMBOID-like protein 3 (.1.2) Potri.015G142000 [exp] 58 / 4e-09 AT5G07250 294 / 2e-98 RHOMBOID-like protein 3 (.1.2) Potri.001G108700 [exp] 57 / 5e-09 AT1G63120 332 / 8e-114 RHOMBOID-like 2 (.1) Potri.012G019350 [exp] 53 / 6e-09 ND / Potri.009G031900 [exp] 57 / 7e-09 AT2G29050 434 / 7e-152 RHOMBOID-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF01694 [flax] [poplar] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Lus10000628 pacid=23175090 polypeptide=Lus10000628 locus=Lus10000628.g ID=Lus10000628.BGIv1.0 annot-version=v1.0 ATGGCTCAACTTCCACTCTGCTACAAACTGCCTTACAAAGATGGCGGCGGCGGCGGCATTTCACCTCTCCAAGCCCATCTGGGTTTTCCCCATGATGCTT ACAGGTTATGGAAGAGTAAAGGAGATGGCTTCTCTGTTTTATGCTGTCGTGATTCACGACACCGGCATGGCGGTGGTAATGAAAAGCAGCGAACGCTTTT GGAGTCTTATTTAGGGAAGCTCCAACGTGATGATGGTTCTAAGAAGAAGGACACGGGAGACGAACTGGATTCGCTGAATGCTTATCTTGACAAAATTGAC CAAGGAAATCCAGTAGGTACAGGCTACAGACCAGAACCAGTAAAGCCTGAACAGAAGAATCAAAATAATTCCTTGGGTGAGTTGAGAAATAAGGGGTCTG CAAGTACTTCCTGGATGGCTCAGTCATTACAGCAGAGTGACGATGATACCTCTAGTTTGTATCTCGTGGGCATATTGGCGTCCATAAACATTGCAGTTTT CTTATTCGAGATAGCAACTCCAGTTAGAAGTTCGGAGTTCCAGCTCTTCTCATTGCCCTTGTTGTATGGAGCGAAGATAAACGATCTGATCCTGACCGGA GAGTGGTGGAGGCTAGTCACTCCAATGTTTCTGCACTATGGAGTTTTCCACGTCGCCCTTGGATGTTGGTCACTTCTTACTTTTGGTCCAGAAGTTTGTC GTCGATATGGCTCGTTTACTTTTCTCTTGATATATATACTCGGAGGCCTCTCTGGTAACTTGACTAGCTTTCTTCACACTCCAGATCCTGCTGTGGGCGG CACGGGGCCAGTTTTTTCGATAATCGGAGCTTGGCTTGTTTATAACAATCAAACTAAAGATGTAACTCACAAGGATACTTCAGAGAGTTTGTTCCAAAAA GCTATGATGGCGACTGCTCTTAGCTTCATATTAAGCCACTTCGGTCCTATCGACGACTGGACGCATTTGGGGTCGATCATGACAGGCATAGTTTACGGGT ACTTCACGTGCCCAACCCTACAGCTCGACGATGCATCGTTAGGGAGTGGGAAGGACGAAGGAAATATAGCAGTTGTCGAGAGACGTCCTGACCTCTGTAA ATCATTGATGTTCTTCGCGATCTTCACAGTGTTTCTGGGTTCTTTGTTGTTCGTTGTGGAACCTCCTCTTGGCACATCGGTGACTGAAAAGGACATCTTA GGGTTGTAA
AA sequence Show only first row Show all	>Lus10000628 pacid=23175090 polypeptide=Lus10000628 locus=Lus10000628.g ID=Lus10000628.BGIv1.0 annot-version=v1.0 MAQLPLCYKLPYKDGGGGGISPLQAHLGFPHDAYRLWKSKGDGFSVLCCRDSRHRHGGGNEKQRTLLESYLGKLQRDDGSKKKDTGDELDSLNAYLDKID QGNPVGTGYRPEPVKPEQKNQNNSLGELRNKGSASTSWMAQSLQQSDDDTSSLYLVGILASINIAVFLFEIATPVRSSEFQLFSLPLLYGAKINDLILTG EWWRLVTPMFLHYGVFHVALGCWSLLTFGPEVCRRYGSFTFLLIYILGGLSGNLTSFLHTPDPAVGGTGPVFSIIGAWLVYNNQTKDVTHKDTSESLFQK AMMATALSFILSHFGPIDDWTHLGSIMTGIVYGYFTCPTLQLDDASLGSGKDEGNIAVVERRPDLCKSLMFFAIFTVFLGSLLFVVEPPLGTSVTEKDIL GL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38510			Rhomboid-related intramembrane...		Lus10000628 [exp]	0	1
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10030053 [exp]	1.7	0.9295
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10020296 [exp]	2.4	0.9179
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10022739 [exp]	5.1	0.8751
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10002906 [exp]	6.8	0.9242
					Lus10023092 [exp]	9.7	0.8544
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10000057 [exp]	9.7	0.8843
AT5G15802			unknown protein		Lus10008785 [exp]	11.0	0.8828
AT1G12250			Pentapeptide repeat-containing...		Lus10024602 [exp]	11.0	0.9098
AT5G19940			Plastid-lipid associated prote...		Lus10042448 [exp]	11.0	0.8927
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Lus10006406 [exp]	11.5	0.8646

Compare expression of checked genes

Lus10000628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.